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  5. Smo181353

Smo181353 (PUB13, ATPUB13)


Aliases : PUB13, ATPUB13

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.U-Box E3 ligase activities.PUB-type


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo181353

Target Alias Description ECC score Gene Family Method Actions
Adi_g025519 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057743 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057744 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g05159 PUB12, AtPUB12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g02170 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16654 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10750 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21703 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44182.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65975.t1 PUB8, B80,... E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000295 No alias not classified & original description: CDS=1-2304 0.04 OrthoFinder output from all 47 species
Ceric.07G010000.1 PUB13, ATPUB13,... E3 ubiquitin ligase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.35G012000.1 PUB13, ATPUB13,... E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Dde_g39767 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04978 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01020229001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os06g01304.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os08g04470.1 PUB8, B80, LOC_Os08g04470 U-box domain-containing protein 8 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os12g38210.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Len_g08149 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02363 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g22628 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42410 ATPUB17, PUB17 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g38766 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09772 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003607 ATPUB17, PUB17 not classified & original description: CDS=1-2595 0.02 OrthoFinder output from all 47 species
Sam_g39035 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g072080.1.1 ATPUB17, PUB17,... U-box domain-containing protein 17 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc11g008390.2.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
Spa_g25117 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07352 ATPUB17, PUB17 E3 ubiquiTin ligase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 468 505
No external refs found!