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  5. Smo182822

Smo182822


Description : Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo182822
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AT4G20010 PTAC9, OSB2 plastid transcriptionally active 9 0.04 OrthoFinder output from all 47 species
AT5G46460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004364 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g06729 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g07974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37527 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17536 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24034 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07390 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g28217 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.38G035700.1 Ceric.38G035700 not classified & original description: pacid=50579678... 0.06 OrthoFinder output from all 47 species
Dac_g30123 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g25879 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01029252001 PTAC9, OSB2 RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
Lfl_g14377 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g39535 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g33469 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17797 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000452 No alias not classified & original description: CDS=1-2067 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006762 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009200 OTP82 not classified & original description: CDS=343-1080 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0232.g026457 No alias not classified & original description: CDS=1-363 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0243.g026662 No alias not classified & original description: CDS=264-2522 0.03 OrthoFinder output from all 47 species
Sam_g30172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g051780.3.1 Solyc03g051780 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Solyc03g116840.3.1 Solyc03g116840 RNA editing factor (OTP81) 0.06 OrthoFinder output from all 47 species
Solyc04g082870.1.1 Solyc04g082870 Pentatricopeptide repeat-containing protein At1g25360... 0.04 OrthoFinder output from all 47 species
Solyc07g005170.3.1 Solyc07g005170 Pentatricopeptide repeat-containing protein At1g09410,... 0.05 OrthoFinder output from all 47 species
Tin_g28482 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 5 53
No external refs found!