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  5. Smo227173

Smo227173


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS30 component


Gene families : OG0002477 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002477_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo227173
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00192320 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AT2G19750 No alias Ribosomal protein S30 family protein 0.04 OrthoFinder output from all 47 species
AT4G29390 No alias Ribosomal protein S30 family protein 0.03 OrthoFinder output from all 47 species
AT5G56670 No alias Ribosomal protein S30 family protein 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036442 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Cba_g69506 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Cba_g73257 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.20G020400.1 Ceric.20G020400 component *(eS30) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001003.33 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Cre16.g666301 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01016902001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Gb_23464 No alias component RPS30 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os02g56014.1 LOC_Os02g56014 component RPS30 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os06g07580.1 LOC_Os06g07580 component RPS30 of SSU proteome 0.04 OrthoFinder output from all 47 species
MA_10432727g0010 No alias component RPS30 of SSU proteome 0.05 OrthoFinder output from all 47 species
Mp8g09080.1 No alias component RPS30 of SSU proteome 0.07 OrthoFinder output from all 47 species
Msp_g20473 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g43255 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pp3c1_420V3.1 Pp3c1_420 Ribosomal protein S30 family protein 0.03 OrthoFinder output from all 47 species
Pp3c2_29010V3.1 Pp3c2_29010 Ribosomal protein S30 family protein 0.04 OrthoFinder output from all 47 species
Sam_g31576 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g35687 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Solyc08g076340.3.1 Solyc08g076340 component RPS30 of SSU proteome 0.05 OrthoFinder output from all 47 species
Solyc12g008700.3.1 Solyc12g008700 component RPS30 of SSU proteome 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0034998 oligosaccharyltransferase I complex IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR006846 Ribosomal_S30 3 59
No external refs found!