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  5. Smo229974

Smo229974


Description : RNA biosynthesis.transcriptional activation.LIM transcription factor


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo229974
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AT3G61230 No alias GATA type zinc finger transcription factor family protein 0.03 OrthoFinder output from all 47 species
Adi_g004397 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g077331 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g098070 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g02798 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03396 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20871 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15655 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16342.t1 Aspi01Gene16342 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20782 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.34G067600.1 WLIM1, Ceric.34G067600 LIM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.35G013400.1 Ceric.35G013400 LIM-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g37425 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03324 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05410 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g27988 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g42820.1 LOC_Os02g42820 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
LOC_Os04g45010.1 LOC_Os04g45010 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
LOC_Os10g35930.1 LOC_Os10g35930 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
LOC_Os12g32620.1 WLIM1, LOC_Os12g32620 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Len_g14961 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05819 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428887g0010 No alias transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Nbi_g06617 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08756 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001741 WLIM1 LIM-type transcription factor & original description: CDS=1-612 0.02 OrthoFinder output from all 47 species
Solyc05g049870.3.1 Solyc05g049870 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Solyc08g007940.4.1 Solyc08g007940 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Zm00001e007423_P001 Zm00001e007423 transcription factor (LIM) 0.04 OrthoFinder output from all 47 species
Zm00001e018310_P001 WLIM1, Zm00001e018310 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Zm00001e023098_P001 Zm00001e023098 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Zm00001e029431_P002 WLIM1, Zm00001e029431 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Zm00001e041310_P001 Zm00001e041310 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 10 64
No external refs found!