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  5. Smo230012

Smo230012 (AtRABA5d, RABA5d)


Aliases : AtRABA5d, RABA5d

Description : Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.A-class RAB GTPase


Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo230012
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene26703.t1 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene29497.t1 AtRABA1f,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60173.t1 AtRABA1f,... A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.97 AtRABA1e, RABA1e Vesicle trafficking.regulation of membrane tethering and... 0.01 OrthoFinder output from all 47 species
Dcu_g50243 AtRABA5a, RABA5a A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g02212 AtRABA5d, RABA5d not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00627 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15960 AtRABA5b, RABA5b A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g00826 RABA2b,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61287 ARA-1, ATRABA5E,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g053480.4.1 AtRABA1f,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Spa_g12437 AtRABA5a, RABA5a A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e032148_P001 ATRABA1B, RAB11,... A-class RAB GTPase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 14 173
No external refs found!