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  5. Smo230291

Smo230291


Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL24 component


Gene families : OG0006569 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006569_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo230291
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT5G54600 No alias Translation protein SH3-like family protein 0.07 OrthoFinder output from all 47 species
Adi_g019582 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Als_g04734 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aop_g00183 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g010426 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Cba_g02325 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.33G048800.1 Ceric.33G048800 component *(uL24c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cre16.g652550 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Dcu_g00516 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Ehy_g22263 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01014572001 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Gb_13209 No alias 50S ribosomal protein L24, chloroplastic OS=Spinacia... 0.06 OrthoFinder output from all 47 species
LOC_Os06g46930.1 LOC_Os06g46930 component psRPL24 of large ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Len_g05147 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Lfl_g05272 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
MA_10018366g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_9411466g0010 No alias 50S ribosomal protein L24, chloroplastic OS=Spinacia... 0.03 OrthoFinder output from all 47 species
Mp3g07850.1 No alias component psRPL24 of large ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Msp_g18519 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Nbi_g00588 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Ore_g05626 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Pir_g07148 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Pp3c15_17530V3.1 Pp3c15_17530 Translation protein SH3-like family protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016787 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sam_g08486 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sam_g08487 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Solyc07g063960.3.1 Solyc07g063960 component psRPL24 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Spa_g00224 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Zm00001e013043_P001 Zm00001e013043 component psRPL24 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR003256 Ribosomal_L24 85 149
No external refs found!