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  5. Smo230302

Smo230302


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL10a component


Gene families : OG0001297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo230302
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00167280 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder output from all 47 species
AMTR_s00053p00163590 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
AT1G08360 No alias Ribosomal protein L1p/L10e family 0.18 OrthoFinder output from all 47 species
AT2G27530 PGY1 Ribosomal protein L1p/L10e family 0.23 OrthoFinder output from all 47 species
AT5G22440 No alias Ribosomal protein L1p/L10e family 0.07 OrthoFinder output from all 47 species
Adi_g012505 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Adi_g053018 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aev_g36055 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g18263 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Ala_g29346 PGY1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g38886 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Aob_g07010 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g02409 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Azfi_s0022.g016098 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Azfi_s0035.g025561 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cba_g08043 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g27630 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cba_g36488 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cba_g66373 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.18G006900.1 Ceric.18G006900 component *(uL1) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Ceric.34G055700.1 Ceric.34G055700 component *(uL1) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020697.31 No alias 60S ribosomal protein L10a OS=Oryza sativa subsp. japonica 0.07 OrthoFinder output from all 47 species
Cre02.g101350 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder output from all 47 species
Dac_g03072 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dac_g25407 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dcu_g03488 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g27860 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g51102 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
GSVIVT01033841001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder output from all 47 species
GSVIVT01036128001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
Gb_13744 No alias component RPL10a of LSU proteome component 0.06 OrthoFinder output from all 47 species
Gb_28506 No alias component RPL10a of LSU proteome component 0.21 OrthoFinder output from all 47 species
LOC_Os01g64090.1 LOC_Os01g64090 component RPL10a of LSU proteome component 0.07 OrthoFinder output from all 47 species
LOC_Os02g21660.1 LOC_Os02g21660 component RPL10a of LSU proteome component 0.12 OrthoFinder output from all 47 species
LOC_Os08g44380.1 LOC_Os08g44380 component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
LOC_Os08g44450.2 LOC_Os08g44450 component RPL10a of LSU proteome component 0.05 OrthoFinder output from all 47 species
Lfl_g06380 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g26241 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_12000g0010 No alias component RPL10a of LSU proteome component 0.05 OrthoFinder output from all 47 species
MA_71921g0010 No alias component RPL10a of LSU proteome component 0.17 OrthoFinder output from all 47 species
Mp3g07870.1 No alias component RPL10a of LSU proteome component 0.2 OrthoFinder output from all 47 species
Msp_g00232 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Nbi_g03987 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g04954 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g18372 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c20_19190V3.1 Pp3c20_19190 Ribosomal protein L1p/L10e family 0.05 OrthoFinder output from all 47 species
Pp3c23_12730V3.1 Pp3c23_12730 Ribosomal protein L1p/L10e family 0.04 OrthoFinder output from all 47 species
Ppi_g26683 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ppi_g34689 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0106.g020220 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g12736 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Sam_g26155 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Solyc01g009520.4.1 Solyc01g009520 component RPL10a of LSU proteome component 0.11 OrthoFinder output from all 47 species
Solyc06g074300.4.1 Solyc06g074300 component RPL10a of LSU proteome component 0.17 OrthoFinder output from all 47 species
Solyc11g068420.2.1 Solyc11g068420 component RPL10a of LSU proteome component 0.12 OrthoFinder output from all 47 species
Spa_g08346 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Spa_g08347 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Spa_g08353 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Spa_g53937 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Tin_g10501 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g39928 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e003939_P002 Zm00001e003939 component RPL10a of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e019205_P001 Zm00001e019205 component RPL10a of LSU proteome component 0.16 OrthoFinder output from all 47 species
Zm00001e022063_P001 Zm00001e022063 component RPL10a of LSU proteome component 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 23 210
No external refs found!