Description : DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana
Gene families : OG0004236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004236_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo403724 | |
| Cluster | HCCA: Cluster_37 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00045p00149950 | evm_27.TU.AmTr_v1... | DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... | 0.02 | OrthoFinder output from all 47 species | |
| AT3G06980 | No alias | DEA(D/H)-box RNA helicase family protein | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g03135 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.28G050700.1 | Ceric.28G050700 | not classified & original description: pacid=50570551... | 0.04 | OrthoFinder output from all 47 species | |
| Cre10.g436650 | No alias | DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
| GSVIVT01017719001 | No alias | DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os03g01830.1 | LOC_Os03g01830 | DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... | 0.05 | OrthoFinder output from all 47 species | |
| Len_g02379 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g37545 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Mp8g11020.1 | No alias | DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g13305 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g33516 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g16562 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e039095_P002 | Zm00001e039095 | DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005524 | ATP binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | HCCA |
| MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| MF | GO:0016763 | pentosyltransferase activity | IEP | HCCA |
| BP | GO:0035556 | intracellular signal transduction | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001650 | Helicase_C | 451 | 545 |
| No external refs found! |
