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  5. Smo438000

Smo438000


Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor


Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo438000

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00156240 CIA2,... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AT4G25990 CIL CCT motif family protein 0.02 OrthoFinder output from all 47 species
Adi_g021795 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099497 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24424 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08686 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31393 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g01431 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene15231.t1 Aspi01Gene15231 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene21386.t1 Aspi01Gene21386 BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0055.g034007 No alias CMF transcription factor & original description: CDS=693-2417 0.03 OrthoFinder output from all 47 species
Azfi_s0172.g055744 No alias not classified & original description: CDS=1-1599 0.04 OrthoFinder output from all 47 species
Cba_g20220 No alias BBX class-III transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g26917 No alias BBX class-III transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g23913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07785 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003983001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
Gb_02486 No alias transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
LOC_Os03g50310.1 LOC_Os03g50310 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Lfl_g17180 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_470965g0010 No alias transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
MA_91504g0010 No alias transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
MA_96860g0010 CIA2 transcription factor (BBX-CO) 0.05 OrthoFinder output from all 47 species
Msp_g47217 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g09212 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16447 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43291 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g12347 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13174 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007602 No alias not classified & original description: CDS=193-1710 0.03 OrthoFinder output from all 47 species
Sam_g15685 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g04602 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20168 No alias BBX class-III transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 27 67
No external refs found!