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  5. Smo438493

Smo438493


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP10 assembly factor


Gene families : OG0003994 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003994_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo438493

Target Alias Description ECC score Gene Family Method Actions
AT3G06530 No alias ARM repeat superfamily protein 0.1 OrthoFinder output from all 47 species
Adi_g117341 No alias SSU processome assembly factor *(UTP10) & original... 0.02 OrthoFinder output from all 47 species
Aop_g39223 No alias SSU processome assembly factor *(UTP10) & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene50223.t1 Aspi01Gene50223 SSU processome assembly factor *(UTP10) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0335.g065507 No alias SSU processome assembly factor *(UTP10) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.101 No alias Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre12.g548000 No alias Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g07784 No alias SSU processome assembly factor *(UTP10) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g26136 No alias SSU processome assembly factor *(UTP10) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01013976001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
LOC_Os04g46310.1 LOC_Os04g46310 SSU processome assembly factor (UTP10) 0.07 OrthoFinder output from all 47 species
MA_10431891g0010 No alias Uncharacterized protein At3g06530 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_735g0010 No alias Uncharacterized protein At3g06530 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp1g06160.1 No alias SSU processome assembly factor (UTP10) 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018710 No alias phosphatidylinositol 4-kinase *(PI4K-gamma) & original... 0.02 OrthoFinder output from all 47 species
Sam_g04467 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27886 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g40580 No alias SSU processome assembly factor *(UTP10) & original... 0.06 OrthoFinder output from all 47 species
Solyc03g093480.3.1 Solyc03g093480 SSU processome assembly factor (UTP10) 0.08 OrthoFinder output from all 47 species
Tin_g20111 No alias SSU processome assembly factor *(UTP10) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e016831_P001 Zm00001e016831 SSU processome assembly factor (UTP10) 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR012954 BP28_C_dom 1698 1856
No external refs found!