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  5. Smo443113

Smo443113


Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo443113
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00245920 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.04 OrthoFinder output from all 47 species
AT2G18300 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G21330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G23690 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G57800 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G28790 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G36540 BEE2 BR enhanced expression 2 0.04 OrthoFinder output from all 47 species
AT4G36930 SPT basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G61270 PIF7 phytochrome-interacting factor7 0.02 OrthoFinder output from all 47 species
Adi_g048981 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Adi_g056069 LRL3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g056779 ATRSL1, RSL1 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03333 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Aev_g08253 HEC2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09029 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g15255 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aev_g17433 CIB1 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Aev_g39005 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Als_g16212 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01760 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g26245 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g29816 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g63732 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g64342 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25247.t2 LRL3, Aspi01Gene25247 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32585.t1 LRL3, Aspi01Gene32585 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33079.t1 UNE12, Aspi01Gene33079 bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene62580.t1 Aspi01Gene62580 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67543.t1 SPT, Aspi01Gene67543 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15802 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34527 HEC2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g68995 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G002800.1 Ceric.28G002800 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Dac_g10732 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17764 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g51679 HEC2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18466 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01026516001 HEC3 RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
LOC_Os01g67480.1 LOC_Os01g67480 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os05g04740.2 PIF3, POC1,... transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os06g08500.1 LRL3, LOC_Os06g08500 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Len_g14229 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g22408 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g37679 RHD6 LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g40314 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_158850g0010 LRL3 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
MA_167128g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g17350.1 SPT transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Mp5g18910.1 HEC1 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Msp_g30793 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46877 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g26145 BPEp, ZCW32, BPE, BPEub regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Nbi_g43908 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ore_g19546 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34452 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38938 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16587 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20190 BPEp, ZCW32, BPE, BPEub regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Pir_g25271 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08374 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c3_8460V3.1 RSL2, Pp3c3_8460 ROOT HAIR DEFECTIVE 6-LIKE 2 0.01 OrthoFinder output from all 47 species
Ppi_g05235 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05246 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013028 No alias bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g15799 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo405220 HEC1 RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Solyc03g113560.4.1 Solyc03g113560 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc04g078790.3.1 HEC2, Solyc04g078790 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc12g010170.2.1 LRL1, Solyc12g010170 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc12g088380.1.1 RSL2, Solyc12g088380 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Spa_g23827 HEC1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24430 HEC1 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g41478 RSL2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g31631 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Zm00001e003624_P003 Zm00001e003624 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Zm00001e012110_P003 Zm00001e012110 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Zm00001e034146_P001 LRL1, Zm00001e034146 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 428 479
No external refs found!