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  5. Smo444102

Smo444102


Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS21 | mtRPS21 component


Gene families : OG0004103 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004103_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo444102
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT3G27160 GHS1 Ribosomal protein S21 family protein 0.08 OrthoFinder output from all 47 species
Als_g01448 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aob_g02683 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aop_g18482 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007465 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Cba_g02864 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ceric.13G030700.1 Ceric.13G030700 component *(bS21c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000863.30 No alias Protein biosynthesis.organelle translation... 0.01 OrthoFinder output from all 47 species
Cre01.g017300 No alias Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Dac_g01906 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dcu_g41032 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dde_g05601 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
LOC_Os02g09590.1 GHS1, LOC_Os02g09590 component mtRPS21|psRPS21 of mitochondrial ribosome... 0.05 OrthoFinder output from all 47 species
Len_g15740 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Lfl_g02717 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
MA_249305g0010 No alias component mtRPS21|psRPS21 of mitochondrial ribosome... 0.04 OrthoFinder output from all 47 species
Mp4g21580.1 No alias component mtRPS21|psRPS21 of mitochondrial ribosome... 0.11 OrthoFinder output from all 47 species
Msp_g36586 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Nbi_g05106 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ore_g01870 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ore_g05303 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pp3c10_22890V3.1 GHS1, Pp3c10_22890 Ribosomal protein S21 family protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007775 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Solyc02g068090.3.1 GHS1, Solyc02g068090 component mtRPS21|psRPS21 of mitochondrial ribosome... 0.03 OrthoFinder output from all 47 species
Tin_g07965 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Zm00001e025066_P001 GHS1, Zm00001e025066 component mtRPS21|psRPS21 of mitochondrial ribosome... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004418 hydroxymethylbilane synthase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR001911 Ribosomal_S21 70 122
No external refs found!