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  5. Smo462

Smo462


Description : Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo462

Target Alias Description ECC score Gene Family Method Actions
AT2G03880 REME1 Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g13039 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aev_g20072 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g38690 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33463 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g09035 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23810 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27600 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27603 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g30148 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04578 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12955 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g15417 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20705 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21617 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28233 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g67673 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g69297 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0028.g024007 No alias not classified & original description: CDS=1-1332 0.03 OrthoFinder output from all 47 species
Azfi_s0029.g024142 No alias not classified & original description: CDS=203-3646 0.03 OrthoFinder output from all 47 species
Azfi_s0032.g024769 OTP84 not classified & original description: CDS=1-2910 0.06 OrthoFinder output from all 47 species
Azfi_s0731.g084096 No alias not classified & original description: CDS=1-3909 0.03 OrthoFinder output from all 47 species
Cba_g04038 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19300 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.31G012200.1 Ceric.31G012200 not classified & original description: pacid=50574907... 0.04 OrthoFinder output from all 47 species
Dcu_g48807 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g02930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08457 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16071 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25652 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28225 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g07891 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18216 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g03863 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04980 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06232 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06446 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06749 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g10694 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g14933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g15216 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g25822 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32911 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g33059 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g35930 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g06449 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g09754 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27667 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43620 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g11826 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11830 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g19619 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57550 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g01598 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g02496 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12390 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24543 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26535 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40204 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo136134 EMB2261 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Solyc09g009790.4.1 Solyc09g009790 Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
Tin_g06491 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g23000 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26623 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g34472 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g44852 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014549_P001 CRR22, Zm00001e014549 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 1 46
No external refs found!