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  5. Smo61782

Smo61782


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo61782

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00242080 CRR28,... Pentatricopeptide repeat-containing protein At1g59720,... 0.02 OrthoFinder output from all 47 species
AMTR_s00039p00210570 EMB2758 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
AMTR_s00103p00160020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
AT1G77010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 OrthoFinder output from all 47 species
AT2G03880 REME1 Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G38010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g036713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060846 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066608 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067914 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g097754 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g115114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37465 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02043 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06555 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16602 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17514 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g20749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22607 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g33463 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g37258 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g05074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06880 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30196 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22756 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g28224 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28661 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37584 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09609 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g28410 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g38034 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g67673 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene30517.t2 CRR22, Aspi01Gene30517 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20724 No alias ssDNA-binding protein *(OSB) & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g67204 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67693 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G053600.1 Ceric.01G053600 not classified & original description: pacid=50592089... 0.03 OrthoFinder output from all 47 species
Ceric.13G010800.1 Ceric.13G010800 not classified & original description: pacid=50634967... 0.04 OrthoFinder output from all 47 species
Ceric.15G056400.1 Ceric.15G056400 not classified & original description: pacid=50639467... 0.07 OrthoFinder output from all 47 species
Ceric.29G039600.1 Ceric.29G039600 not classified & original description: pacid=50625761... 0.04 OrthoFinder output from all 47 species
Ceric.30G025700.1 CRR22, Ceric.30G025700 not classified & original description: pacid=50609433... 0.03 OrthoFinder output from all 47 species
Dac_g16457 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05705 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07145 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07608 CRR22 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g08312 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16950 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g17068 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g26408 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26576 OTP86 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g26847 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g28293 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g36021 EMB2261 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g38688 CRR2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g40678 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40969 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g42645 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43186 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g45747 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45851 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g47935 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g50140 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g04370 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g17642 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23651 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49684 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18216 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009574001 OSB1 Cell cycle.organelle machineries.DNA... 0.06 OrthoFinder output from all 47 species
Gb_07106 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Gb_07756 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_18979 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Gb_21270 OTP84 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
Gb_38068 OTP86 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Gb_41341 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
LOC_Os01g60250.1 LOC_Os01g60250 Pentatricopeptide repeat-containing protein At3g14730... 0.05 OrthoFinder output from all 47 species
LOC_Os01g60430.1 LOC_Os01g60430 RNA editing factor (MEF10) 0.06 OrthoFinder output from all 47 species
LOC_Os04g58980.1 LOC_Os04g58980 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
LOC_Os06g40860.1 LOC_Os06g40860 Pentatricopeptide repeat-containing protein At1g03540... 0.03 OrthoFinder output from all 47 species
LOC_Os07g47370.1 LOC_Os07g47370 Pentatricopeptide repeat-containing protein At4g32430,... 0.06 OrthoFinder output from all 47 species
LOC_Os11g29360.1 OTP82, LOC_Os11g29360 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
Len_g17783 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g21866 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g23907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g25721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26566 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g44151 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54967 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g59570 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07381 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12012 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17636 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g33253 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g36057 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_116442g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
MA_68707g0010 No alias RNA editing factor (MEF1) 0.02 OrthoFinder output from all 47 species
MA_904305g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Msp_g04447 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15447 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g25779 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28533 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28762 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g31780 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g37617 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41392 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g46073 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04447 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g21989 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g27956 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g41038 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g08941 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22914 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03998 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04681 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06373 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06423 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07564 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14215 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14437 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15472 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16324 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18881 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31411 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g40056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g45358 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g46631 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g48448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53019 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53028 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53363 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53562 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63100 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g114660.1.1 Solyc03g114660 Pentatricopeptide repeat-containing protein At1g18485... 0.07 OrthoFinder output from all 47 species
Spa_g01102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12935 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20189 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g39685 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g40438 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g53279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44069 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e011519_P001 Zm00001e011519 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Zm00001e013232_P001 Zm00001e013232 Pentatricopeptide repeat-containing protein At2g36730... 0.08 OrthoFinder output from all 47 species
Zm00001e014549_P001 CRR22, Zm00001e014549 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Zm00001e041694_P001 Zm00001e041694 Pentatricopeptide repeat-containing protein At5g16860... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 531 554
No external refs found!