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  5. Smo74321

Smo74321 (DCL4, ATDCL4)


Aliases : DCL4, ATDCL4

Description : RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Smo74321

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00252700 ATRTL2, RTL2,... RNA biosynthesis.siRNA biogenesis.RTL2 ribonuclease-III... 0.02 OrthoFinder output from all 47 species
AMTR_s00018p00015000 DCL1, CAF,... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 OrthoFinder output from all 47 species
AT1G01040 DCL1, CAF,... dicer-like 1 0.04 OrthoFinder output from all 47 species
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.03 OrthoFinder output from all 47 species
Adi_g022447 DCL1, CAF,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Aev_g13800 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Als_g22807 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.04 OrthoFinder output from all 47 species
Aob_g19967 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene32281.t1 DCL4, ATDCL4,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene32282.t1 DCL4, ATDCL4,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G108700.1 DCL4, ATDCL4,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Ceric.1Z277300.1 DCL1, CAF,... not classified & original description: pacid=50600427... 0.02 OrthoFinder output from all 47 species
Dac_g43749 DCL1, CAF,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13692 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Dcu_g36083 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Dde_g23096 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
Ehy_g15817 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
LOC_Os01g68120.1 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.05 OrthoFinder output from all 47 species
LOC_Os03g02970.1 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
LOC_Os04g43050.1 DCL4, ATDCL4,... endoribonuclease (DCL4) 0.02 OrthoFinder output from all 47 species
LOC_Os09g14610.1 ATDCL2, DCL2,... Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp.... 0.01 OrthoFinder output from all 47 species
Lfl_g03508 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Lfl_g06763 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.04 OrthoFinder output from all 47 species
MA_10436812g0020 DCL4, ATDCL4 Dicer-like protein 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10437243g0010 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
MA_10437243g0020 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ppi_g29457 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Zm00001e018890_P004 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 300 415
No external refs found!