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  5. Smo7665

Smo7665 (emb1473)


Aliases : emb1473

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component


Gene families : OG0006254 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006254_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo7665

Target Alias Description ECC score Gene Family Method Actions
AT1G78630 emb1473 Ribosomal protein L13 family protein 0.02 OrthoFinder output from all 47 species
Aev_g00534 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ala_g09807 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Als_g17613 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aob_g06248 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aop_g00301 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Azfi_s0224.g058887 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ceric.14G072800.1 emb1473, Ceric.14G072800 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Cre06.g264350 emb1473 Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Dac_g17592 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Dde_g01255 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ehy_g04479 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01014101001 emb1473 Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Gb_28095 emb1473 component psRPL13 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Len_g01005 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Lfl_g03832 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
MA_10433400g0010 emb1473 component psRPL13 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
MA_27171g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp3g07030.1 emb1473 component psRPL13 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Msp_g09623 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g11308 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pp3c24_18330V3.1 emb1473, Pp3c24_18330 Ribosomal protein L13 family protein 0.01 OrthoFinder output from all 47 species
Sam_g16893 No alias component *(uL13c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Solyc07g062190.4.1 emb1473, Solyc07g062190 component psRPL13 of large ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Solyc12g014390.3.1 emb1473, Solyc12g014390 component psRPL13 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Spa_g21366 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Tin_g09876 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
CC GO:0009512 cytochrome b6f complex IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 4 128
No external refs found!