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  5. Smo77340

Smo77340


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo77340

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00439p00011030 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.04 OrthoFinder output from all 47 species
AT5G59600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g005640 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g010343 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011562 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g013826 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036768 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060025 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067972 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g097872 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g100785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g103055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24046 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g33113 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene10779.t1 CRR22, Aspi01Gene10779 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene11731.t1 Aspi01Gene11731 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0090.g042642 No alias not classified & original description: CDS=39-695 0.02 OrthoFinder output from all 47 species
Azfi_s0583.g078513 No alias not classified & original description: CDS=1-2793 0.03 OrthoFinder output from all 47 species
Azfi_s1756.g106494 No alias not classified & original description: CDS=1-1938 0.04 OrthoFinder output from all 47 species
Ceric.1Z254100.1 Ceric.1Z254100 not classified & original description: pacid=50632850... 0.02 OrthoFinder output from all 47 species
Ceric.27G036800.1 VAC1, ECB2,... not classified & original description: pacid=50605276... 0.03 OrthoFinder output from all 47 species
Dcu_g06831 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g49830.1 LOC_Os02g49830 Pentatricopeptide repeat-containing protein At3g22690... 0.02 OrthoFinder output from all 47 species
Len_g03770 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g32845 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54059 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_81105g0010 REME1 RNA editing factor (OTP82) 0.02 OrthoFinder output from all 47 species
Ore_g23510 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g36349 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04645 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g09062 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011560 No alias not classified & original description: CDS=661-2424 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014492 No alias not classified & original description: CDS=1-2247 0.03 OrthoFinder output from all 47 species
Sam_g21956 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50428 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g065410.3.1 CRR22, Solyc02g065410 Pentatricopeptide repeat-containing protein At1g20230... 0.02 OrthoFinder output from all 47 species
Spa_g48112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02687 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e021453_P001 CRR28, Zm00001e021453 Pentatricopeptide repeat-containing protein At5g06540... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 25 53
No external refs found!