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  5. Smo80365

Smo80365 (CRR2)


Aliases : CRR2

Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo80365
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Adi_g003740 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32984 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g05667 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06261 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g46291 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04742 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g25161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene24967.t1 Aspi01Gene24967 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28051.t1 Aspi01Gene28051 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene49181.t1 Aspi01Gene49181 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene64343.t1 Aspi01Gene64343 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0004.g008648 No alias not classified & original description: CDS=1-2118 0.02 OrthoFinder output from all 47 species
Azfi_s0005.g009069 CRR22 not classified & original description: CDS=1-1992 0.01 OrthoFinder output from all 47 species
Azfi_s0007.g010932 REME1 not classified & original description: CDS=1-1479 0.02 OrthoFinder output from all 47 species
Azfi_s0090.g042642 No alias not classified & original description: CDS=39-695 0.01 OrthoFinder output from all 47 species
Cba_g75397 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G093000.1 Ceric.05G093000 not classified & original description: pacid=50577993... 0.01 OrthoFinder output from all 47 species
Ceric.09G007000.1 Ceric.09G007000 not classified & original description: pacid=50586983... 0.01 OrthoFinder output from all 47 species
Ceric.1Z254100.1 Ceric.1Z254100 not classified & original description: pacid=50632850... 0.01 OrthoFinder output from all 47 species
Ceric.27G067100.1 CRR22, Ceric.27G067100 not classified & original description: pacid=50605115... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001038.5 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g21258 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g43925 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29241 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g41493 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
LOC_Os12g06650.1 LOC_Os12g06650 Pentatricopeptide repeat-containing protein At4g15720... 0.01 OrthoFinder output from all 47 species
LOC_Os12g15460.1 LOC_Os12g15460 Pentatricopeptide repeat-containing protein At1g18485... 0.01 OrthoFinder output from all 47 species
Len_g33724 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_5858185g0010 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.01 OrthoFinder output from all 47 species
Msp_g05630 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28224 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06724 OTP86 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g23620 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g26245 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g30346 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g42872 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57080 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g003970 No alias not classified & original description: CDS=1-3009 0.03 OrthoFinder output from all 47 species
Sam_g19797 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g08239 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12101 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g25072 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g39240 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g44644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53271 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e016281_P001 LPA66, Zm00001e016281 Pentatricopeptide repeat-containing protein At3g62890... 0.02 OrthoFinder output from all 47 species
Zm00001e039394_P003 Zm00001e039394 Pentatricopeptide repeat-containing protein At5g04780,... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 38 58
No external refs found!