Aliases : ATCPSF160, CPSF160
Description : RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF160/Yhh1 component
Gene families : OG0003336 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003336_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo82277 | |
| Cluster | HCCA: Cluster_93 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00041p00037520 | ATCPSF160,... | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.06 | OrthoFinder output from all 47 species | |
| AT5G51660 | ATCPSF160, CPSF160 | cleavage and polyadenylation specificity factor 160 | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g021155 | ATCPSF160, CPSF160 | component *(CPSF160/Yhh1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g19211 | ATCPSF160, CPSF160 | component *(CPSF160/Yhh1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g01205 | ATCPSF160, CPSF160 | component *(CPSF160/Yhh1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene55703.t1 | ATCPSF160,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene55705.t1 | ATCPSF160,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.05G035200.1 | ATCPSF160,... | component *(CPSF160/Yhh1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001164.20 | ATCPSF160, CPSF160 | Cleavage and polyadenylation specificity factor subunit... | 0.01 | OrthoFinder output from all 47 species | |
| Cre13.g573450 | ATCPSF160, CPSF160 | Probable cleavage and polyadenylation specificity factor... | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g19520 | ATCPSF160, CPSF160 | component *(CPSF160/Yhh1) of Cleavage and... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g02994 | ATCPSF160, CPSF160 | component *(CPSF160/Yhh1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g15463 | ATCPSF160, CPSF160 | component *(CPSF160/Yhh1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01018506001 | ATCPSF160, CPSF160 | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.06 | OrthoFinder output from all 47 species | |
| Gb_25538 | ATCPSF160, CPSF160 | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_25541 | ATCPSF160, CPSF160 | Cleavage and polyadenylation specificity factor subunit... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g18010.1 | ATCPSF160,... | component CPSF160/Yhh1 of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
| MA_10435523g0020 | ATCPSF160, CPSF160 | Cleavage and polyadenylation specificity factor subunit... | 0.07 | OrthoFinder output from all 47 species | |
| MA_169369g0010 | ATCPSF160, CPSF160 | Cleavage and polyadenylation specificity factor subunit... | 0.08 | OrthoFinder output from all 47 species | |
| MA_64261g0010 | ATCPSF160, CPSF160 | Probable cleavage and polyadenylation specificity factor... | 0.02 | OrthoFinder output from all 47 species | |
| MA_9146756g0010 | ATCPSF160, CPSF160 | Cleavage and polyadenylation specificity factor subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g06583 | ATCPSF160, CPSF160 | component *(CPSF160/Yhh1) of Cleavage and... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g06584 | ATCPSF160, CPSF160 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g12638 | ATCPSF160, CPSF160 | component *(CPSF160/Yhh1) of Cleavage and... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g007100.3.1 | ATCPSF160,... | component CPSF160/Yhh1 of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g41718 | ATCPSF160, CPSF160 | component *(CPSF160/Yhh1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e008515_P003 | ATCPSF160,... | component CPSF160/Yhh1 of Cleavage and Polyadenylation... | 0.07 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005634 | nucleus | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000075 | cell cycle checkpoint signaling | IEP | HCCA |
| MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | HCCA |
| MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004519 | endonuclease activity | IEP | HCCA |
| MF | GO:0004521 | endoribonuclease activity | IEP | HCCA |
| MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006810 | transport | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| BP | GO:0007088 | regulation of mitotic nuclear division | IEP | HCCA |
| BP | GO:0007093 | mitotic cell cycle checkpoint signaling | IEP | HCCA |
| BP | GO:0007094 | mitotic spindle assembly checkpoint signaling | IEP | HCCA |
| BP | GO:0007346 | regulation of mitotic cell cycle | IEP | HCCA |
| MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
| BP | GO:0008104 | protein localization | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| MF | GO:0008194 | UDP-glycosyltransferase activity | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0010564 | regulation of cell cycle process | IEP | HCCA |
| BP | GO:0010639 | negative regulation of organelle organization | IEP | HCCA |
| BP | GO:0010948 | negative regulation of cell cycle process | IEP | HCCA |
| BP | GO:0010965 | regulation of mitotic sister chromatid separation | IEP | HCCA |
| BP | GO:0015031 | protein transport | IEP | HCCA |
| MF | GO:0015631 | tubulin binding | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
| MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | HCCA |
| MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | HCCA |
| BP | GO:0022402 | cell cycle process | IEP | HCCA |
| BP | GO:0030071 | regulation of mitotic metaphase/anaphase transition | IEP | HCCA |
| BP | GO:0031577 | spindle checkpoint signaling | IEP | HCCA |
| BP | GO:0033036 | macromolecule localization | IEP | HCCA |
| BP | GO:0033043 | regulation of organelle organization | IEP | HCCA |
| BP | GO:0033044 | regulation of chromosome organization | IEP | HCCA |
| BP | GO:0033045 | regulation of sister chromatid segregation | IEP | HCCA |
| BP | GO:0033046 | negative regulation of sister chromatid segregation | IEP | HCCA |
| BP | GO:0033047 | regulation of mitotic sister chromatid segregation | IEP | HCCA |
| BP | GO:0033048 | negative regulation of mitotic sister chromatid segregation | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0035251 | UDP-glucosyltransferase activity | IEP | HCCA |
| BP | GO:0035556 | intracellular signal transduction | IEP | HCCA |
| MF | GO:0043015 | gamma-tubulin binding | IEP | HCCA |
| BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
| BP | GO:0045786 | negative regulation of cell cycle | IEP | HCCA |
| BP | GO:0045839 | negative regulation of mitotic nuclear division | IEP | HCCA |
| BP | GO:0045841 | negative regulation of mitotic metaphase/anaphase transition | IEP | HCCA |
| BP | GO:0045930 | negative regulation of mitotic cell cycle | IEP | HCCA |
| MF | GO:0046527 | glucosyltransferase activity | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0048523 | negative regulation of cellular process | IEP | HCCA |
| BP | GO:0051128 | regulation of cellular component organization | IEP | HCCA |
| BP | GO:0051129 | negative regulation of cellular component organization | IEP | HCCA |
| BP | GO:0051179 | localization | IEP | HCCA |
| BP | GO:0051234 | establishment of localization | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| BP | GO:0051726 | regulation of cell cycle | IEP | HCCA |
| BP | GO:0051783 | regulation of nuclear division | IEP | HCCA |
| BP | GO:0051784 | negative regulation of nuclear division | IEP | HCCA |
| BP | GO:0051983 | regulation of chromosome segregation | IEP | HCCA |
| BP | GO:0051985 | negative regulation of chromosome segregation | IEP | HCCA |
| MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | HCCA |
| BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
| BP | GO:0071173 | spindle assembly checkpoint signaling | IEP | HCCA |
| BP | GO:0071174 | mitotic spindle checkpoint signaling | IEP | HCCA |
| BP | GO:0071702 | organic substance transport | IEP | HCCA |
| BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901987 | regulation of cell cycle phase transition | IEP | HCCA |
| BP | GO:1901988 | negative regulation of cell cycle phase transition | IEP | HCCA |
| BP | GO:1901990 | regulation of mitotic cell cycle phase transition | IEP | HCCA |
| BP | GO:1901991 | negative regulation of mitotic cell cycle phase transition | IEP | HCCA |
| BP | GO:1902099 | regulation of metaphase/anaphase transition of cell cycle | IEP | HCCA |
| BP | GO:1902100 | negative regulation of metaphase/anaphase transition of cell cycle | IEP | HCCA |
| BP | GO:1903047 | mitotic cell cycle process | IEP | HCCA |
| BP | GO:1905818 | regulation of chromosome separation | IEP | HCCA |
| BP | GO:1905819 | negative regulation of chromosome separation | IEP | HCCA |
| BP | GO:2000816 | negative regulation of mitotic sister chromatid separation | IEP | HCCA |
| BP | GO:2001251 | negative regulation of chromosome organization | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |
