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  5. Smo90480

Smo90480


Description : Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo90480
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Adi_g004703 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g067920 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s1596.g104539 No alias not classified & original description: CDS=111-3779 0.07 OrthoFinder output from all 47 species
Cba_g11982 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19790 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g29504 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g31665 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67679 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g21941 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g12101 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01029252001 PTAC9, OSB2 RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
LOC_Os03g60690.1 LPA66, LOC_Os03g60690 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
LOC_Os06g02200.1 CRR22, LOC_Os06g02200 RNA editing factor (CRR22) 0.03 OrthoFinder output from all 47 species
Ore_g12881 RARE1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18964 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g21836 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g23525 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g27030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11830 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15680 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16101 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010124 No alias ssDNA-binding protein *(OSB) & original description: CDS=208-2547 0.02 OrthoFinder output from all 47 species
Sam_g33599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo34484 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 OrthoFinder output from all 47 species
Smo74627 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Smo88824 CRR2 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Spa_g20291 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45608 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e040855_P003 Zm00001e040855 Pentatricopeptide repeat-containing protein At2g37320... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 65 113
No external refs found!