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  5. Smo96499

Smo96499


Description : Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo96499
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Ala_g10403 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09026 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g26935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40045 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07588 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g08252 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20359 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g38918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g39107 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20548 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05580 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15388 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g38992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_18166 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Gb_33411 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
LOC_Os01g15530.1 LOC_Os01g15530 Pentatricopeptide repeat-containing protein At5g56310... 0.03 OrthoFinder output from all 47 species
LOC_Os11g45410.1 LOC_Os11g45410 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Len_g03710 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g30237 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g35356 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02848 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03426 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13533 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28758 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g19054 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04699 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06604 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e002552_P001 Zm00001e002552 RNA editing factor (SEL1/PDM1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 78 107
No external refs found!