Solyc00g500034.1.1 (Solyc00g500034)

Aliases : Solyc00g500034

Description : component psRPL22 of large ribosomal subunit proteome. component psRPS3 of small ribosomal subunit proteome

Gene families : OG0006596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006596_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc00g500034.1.1

Target	Alias	Description	ECC score	Gene Family Method
ATCG00800	No alias	structural constituent of ribosome	0.09	OrthoFinder output from all 47 species
Aev_g14422	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Als_g09230	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aob_g23172	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Cba_g05105	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.05G042400.1	Ceric.05G042400	component *(uS3c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.29G068400.1	Ceric.29G068400	component *(uS3c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.38G009200.1	Ceric.38G009200	component *(uS3c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dcu_g13090	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Gb_15033	No alias	component psRPS3 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
LOC_Os04g16824.1	LOC_Os04g16824	component psRPS3 of small ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
LOC_Os09g24416.1	LOC_Os09g24416	component psRPS3 of small ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Ore_g10343	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Pir_g00314	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s3366.g028730	No alias	not classified & original description: CDS=1-393	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s3471.g028813	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001351	Ribosomal_S3_C	265	347
IPR001063	Ribosomal_L22	13	113

External Links

No external refs found!

Solyc00g500034.1.1 (Solyc00g500034)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation