Solyc00g500194.1.1 (YCF5, Solyc00g500194)

Aliases : YCF5, Solyc00g500194

Description : Cytochrome c biogenesis protein CcsA OS=Solanum tuberosum (sp|q2ved1|ccsa_soltu : 82.8)

Gene families : OG0008998 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008998_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc00g500194.1.1

Target	Alias	Description	ECC score	Gene Family Method
ATCG01040	YCF5	Cytochrome C assembly protein	0.43	OrthoFinder output from all 47 species
Aev_g47212	YCF5	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.31	OrthoFinder output from all 47 species
Aob_g08809	YCF5	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.05	OrthoFinder output from all 47 species
Cba_g78789	YCF5	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.14	OrthoFinder output from all 47 species
Ceric.01G044100.1	YCF5, Ceric.01G044100	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.11	OrthoFinder output from all 47 species
Ceric.05G043800.1	YCF5, Ceric.05G043800	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.1	OrthoFinder output from all 47 species
Ceric.05G045200.1	YCF5, Ceric.05G045200	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.04	OrthoFinder output from all 47 species
Ceric.05G046400.1	YCF5, Ceric.05G046400	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.11	OrthoFinder output from all 47 species
Ceric.16G017600.1	YCF5, Ceric.16G017600	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.05	OrthoFinder output from all 47 species
Ceric.18G053700.1	YCF5, Ceric.18G053700	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.2	OrthoFinder output from all 47 species
Ceric.19G029400.1	YCF5, Ceric.19G029400	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.12	OrthoFinder output from all 47 species
Ceric.35G068700.1	YCF5, Ceric.35G068700	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.12	OrthoFinder output from all 47 species
Ceric.39G055700.1	YCF5, Ceric.39G055700	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.12	OrthoFinder output from all 47 species
GSVIVT01004975001	YCF5	Photosynthesis.photophosphorylation.cytochrome b6/f...	0.1	OrthoFinder output from all 47 species
Gb_33050	YCF5	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.14	OrthoFinder output from all 47 species
LOC_Os06g46434.1	YCF5, LOC_Os06g46434	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.4	OrthoFinder output from all 47 species
Lfl_g37809	YCF5	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.12	OrthoFinder output from all 47 species
Nbi_g17271	YCF5	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.04	OrthoFinder output from all 47 species
Solyc11g021210.2.1	YCF5, Solyc11g021210	assembly factor CcsA of CCS cytochrome f/c6 maturation...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0017004	cytochrome complex assembly	IEA	Interproscan
MF	GO:0020037	heme binding	IEA	Interproscan
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009579	thylakoid	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
CC	GO:0031361	obsolete integral component of thylakoid membrane	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0048038	quinone binding	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002541	Cyt_c_assembly	22	68

External Links

No external refs found!

Solyc00g500194.1.1 (YCF5, Solyc00g500194)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation