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  5. Solyc00g500198.1.1

Solyc00g500198.1.1 (YCF2.1, Solyc00g500198)


Aliases : YCF2.1, Solyc00g500198

Description : regulatory component YCF2 of AAA-ATPase motor complex


Gene families : OG0003470 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003470_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g500198.1.1
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00217120 YCF2.1,... Protein Ycf2 OS=Amborella trichopoda 0.05 OrthoFinder output from all 47 species
AMTR_s00543p00008950 YCF2.1,... Protein Ycf2 OS=Morus indica 0.06 OrthoFinder output from all 47 species
ATCG00860 YCF2.1 Chloroplast Ycf2;ATPase, AAA type, core 0.14 OrthoFinder output from all 47 species
ATCG01280 YCF2.2 Chloroplast Ycf2;ATPase, AAA type, core 0.14 OrthoFinder output from all 47 species
GSVIVT01029119001 YCF2.1 Protein Ycf2 OS=Vitis vinifera 0.08 OrthoFinder output from all 47 species
GSVIVT01029605001 No alias Protein Ycf2 OS=Vitis vinifera 0.08 OrthoFinder output from all 47 species
Solyc02g014780.1.1 YCF2.1, Solyc02g014780 Protein Ycf2 OS=Nicotiana tabacum (sp|p09976|ycf2_tobac : 133.0) 0.02 OrthoFinder output from all 47 species
Zm00001e009619_P001 YCF2.1, Zm00001e009619 Protein Ycf2 OS=Lemna minor (sp|a9l9d9|ycf2_lemmi : 100.0) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0009507 chloroplast IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 1557 1734
IPR008543 Uncharacterised_Ycf2 967 1407
IPR008543 Uncharacterised_Ycf2 1 968
No external refs found!