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  5. Solyc00g500245.1.1

Solyc00g500245.1.1 (Solyc00g500245)


Aliases : Solyc00g500245

Description : component mtRPL16 of large ribosomal subunit proteome. component mtRPS3 of small ribosomal subunit proteome. component mtRPS19 of small ribosomal subunit proteome


Gene families : OG0004825 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004825_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g500245.1.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s02809p00000680 evm_27.TU.AmTr_v1... 50S ribosomal protein L16, chloroplastic OS=Amborella trichopoda 0.05 OrthoFinder output from all 47 species
ATCG00790 RPL16 ribosomal protein L16 0.04 OrthoFinder output from all 47 species
ATMG00080 RPL16 ribosomal protein L16 0.09 OrthoFinder output from all 47 species
Aob_g10973 RPL16 component *(uL16m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aop_g00855 RPL16 component *(uL16m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ceric.05G052200.1 RPL16, Ceric.05G052200 not classified & original description: pacid=50577977... 0.05 OrthoFinder output from all 47 species
Ceric.29G004300.1 RPL16, Ceric.29G004300 not classified & original description: pacid=50624823... 0.03 OrthoFinder output from all 47 species
Ceric.35G023300.1 RPL16, Ceric.35G023300 not classified & original description: pacid=50581973... 0.01 OrthoFinder output from all 47 species
Gb_05912 RPL16 component mtRPL16 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Gb_40955 RPL16 50S ribosomal protein L16, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os01g57958.1 LOC_Os01g57958 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.03 OrthoFinder output from all 47 species
LOC_Os04g16826.1 LOC_Os04g16826 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.03 OrthoFinder output from all 47 species
LOC_Os10g21344.1 LOC_Os10g21344 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.03 OrthoFinder output from all 47 species
LOC_Os12g34128.1 LOC_Os12g34128 component mtRPL16 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Mp1g22400.1 No alias 60S ribosomal protein L16, mitochondrial OS=Marchantia... 0.04 OrthoFinder output from all 47 species
Ore_g00369 RPL16 component *(uL16c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Smo137887 RPL16 50S ribosomal protein L16, chloroplastic OS=Huperzia lucidula 0.04 OrthoFinder output from all 47 species
Solyc08g074700.1.1 RPL16, Solyc08g074700 component mtRPL16 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002222 Ribosomal_S19 4 79
IPR001351 Ribosomal_S3_C 475 546
IPR016180 Ribosomal_L10e/L16 547 672
No external refs found!