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  5. Solyc01g017370.2.1

Solyc01g017370.2.1 (RPOC1, Solyc01g017370)


Aliases : RPOC1, Solyc01g017370

Description : DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis (sp|q33c47|rpoc1_nicto : 209.0)


Gene families : OG0006500 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006500_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g017370.2.1
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
ATCG00180 RPOC1 DNA-directed RNA polymerase family protein 0.19 OrthoFinder output from all 47 species
Aev_g25869 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.17 OrthoFinder output from all 47 species
Als_g17479 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.05 OrthoFinder output from all 47 species
Cba_g01180 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.06 OrthoFinder output from all 47 species
Ceric.07G092700.1 RPOC1, Ceric.07G092700 not classified & original description: pacid=50627572... 0.03 OrthoFinder output from all 47 species
Ceric.29G004700.1 RPOC1, Ceric.29G004700 not classified & original description: pacid=50625659... 0.09 OrthoFinder output from all 47 species
Ceric.29G004800.1 RPOC1, Ceric.29G004800 core component *(RpoC1) of plastid-encoded RNA... 0.04 OrthoFinder output from all 47 species
Ceric.38G010000.1 RPOC1, Ceric.38G010000 core component *(RpoC1) of plastid-encoded RNA... 0.06 OrthoFinder output from all 47 species
LOC_Os02g24614.1 RPOC1, LOC_Os02g24614 RpoC1 core component plastid-encoded RNA polymerase 0.12 OrthoFinder output from all 47 species
Len_g58564 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.04 OrthoFinder output from all 47 species
Mp4g02290.1 RPOC1 DNA-directed RNA polymerase subunit beta OS=Marchantia... 0.09 OrthoFinder output from all 47 species
Nbi_g14005 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.12 OrthoFinder output from all 47 species
Pir_g09480 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027469 No alias not classified & original description: CDS=1-663 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027470 RPOC1 not classified & original description: CDS=1-777 0.07 OrthoFinder output from all 47 species
Sam_g03396 No alias core component *(RpoC1) of plastid-encoded RNA... 0.04 OrthoFinder output from all 47 species
Solyc08g014390.1.1 RPOC1, Solyc08g014390 DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
InterPro domains Description Start Stop
IPR007080 RNA_pol_Rpb1_1 4 96
No external refs found!