Solyc01g017470.3.1 (RPOC1, Solyc01g017470)

Aliases : RPOC1, Solyc01g017470

Description : DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum (sp|q2mia9|rpoc1_sollc : 252.0)

Gene families : OG0006500 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006500_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g017470.3.1
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
ATCG00180	RPOC1	DNA-directed RNA polymerase family protein	0.25	OrthoFinder output from all 47 species
Aev_g25869	RPOC1	core component *(RpoC1) of plastid-encoded RNA...	0.23	OrthoFinder output from all 47 species
Als_g17479	RPOC1	core component *(RpoC1) of plastid-encoded RNA...	0.08	OrthoFinder output from all 47 species
Cba_g01180	RPOC1	core component *(RpoC1) of plastid-encoded RNA...	0.09	OrthoFinder output from all 47 species
Ceric.29G004700.1	RPOC1, Ceric.29G004700	not classified & original description: pacid=50625659...	0.1	OrthoFinder output from all 47 species
Ceric.29G004800.1	RPOC1, Ceric.29G004800	core component *(RpoC1) of plastid-encoded RNA...	0.07	OrthoFinder output from all 47 species
Ceric.38G010000.1	RPOC1, Ceric.38G010000	core component *(RpoC1) of plastid-encoded RNA...	0.08	OrthoFinder output from all 47 species
Gb_39909	RPOC1	RpoC1 core component plastid-encoded RNA polymerase	0.04	OrthoFinder output from all 47 species
LOC_Os02g24614.1	RPOC1, LOC_Os02g24614	RpoC1 core component plastid-encoded RNA polymerase	0.12	OrthoFinder output from all 47 species
Mp4g02290.1	RPOC1	DNA-directed RNA polymerase subunit beta OS=Marchantia...	0.08	OrthoFinder output from all 47 species
Nbi_g14005	RPOC1	core component *(RpoC1) of plastid-encoded RNA...	0.08	OrthoFinder output from all 47 species
Pir_g09480	RPOC1	core component *(RpoC1) of plastid-encoded RNA...	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027469	No alias	not classified & original description: CDS=1-663	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027470	RPOC1	not classified & original description: CDS=1-777	0.06	OrthoFinder output from all 47 species
Sam_g03396	No alias	core component *(RpoC1) of plastid-encoded RNA...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
CC	GO:0009579	thylakoid	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0031647	regulation of protein stability	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
MF	GO:0042301	phosphate ion binding	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0050821	protein stabilization	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000722	RNA_pol_asu	2	69

External Links

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Solyc01g017470.3.1 (RPOC1, Solyc01g017470)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation