Solyc01g068330.4.1 (emb1354, CDC48C,...)

Aliases : emb1354, CDC48C, Solyc01g068330

Description : Cell division control protein 48 homolog C OS=Arabidopsis thaliana (sp|q9ss94|cd48c_arath : 656.0)

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g068330.4.1

Target	Alias	Description	ECC score	Gene Family Method
AT3G01610	emb1354, CDC48C	cell division cycle 48C	0.07	OrthoFinder output from all 47 species
AT3G53230	No alias	ATPase, AAA-type, CDC48 protein	0.03	OrthoFinder output from all 47 species
AT3G56690	CIP111	Cam interacting protein 111	0.04	OrthoFinder output from all 47 species
Adi_g080379	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g114666	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g33031	No alias	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g02580	CDC48B	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.02G031700.1	Ceric.02G031700	platform ATPase CDC48 & original description:...	0.03	OrthoFinder output from all 47 species
Cre09.g398550	emb1354, CDC48C	Cell division control protein 48 homolog C...	0.03	OrthoFinder output from all 47 species
Cre17.g700300	CDC48B	Cell division control protein 48 homolog B...	0.02	OrthoFinder output from all 47 species
Dac_g09762	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g08248	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g10601	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g20961	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g03992	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09095	CDC48B	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01007689001	No alias	Cell division cycle protein 48 homolog OS=Glycine max	0.04	OrthoFinder output from all 47 species
GSVIVT01025783001	CIP111	Calmodulin-interacting protein 111 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
LOC_Os06g01980.1	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.05	OrthoFinder output from all 47 species
LOC_Os11g11340.1	CIP111, LOC_Os11g11340	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Mp2g12350.1	emb1354, CDC48C	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Ore_g40907	CDC48B	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g18794	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g12429	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g04738	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g15152	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e000416_P002	Zm00001e000416	platform ATPase (CDC48)	0.07	OrthoFinder output from all 47 species
Zm00001e035514_P002	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.04	OrthoFinder output from all 47 species
Zm00001e036688_P001	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005730	nucleolus	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	215	250
IPR003959	ATPase_AAA_core	33	190
IPR003959	ATPase_AAA_core	351	479

External Links

No external refs found!

Solyc01g068330.4.1 (emb1354, CDC48C,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation