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  5. Solyc01g096390.4.1

Solyc01g096390.4.1 (DRD3, ATNRPD1B,...)


Aliases : DRD3, ATNRPD1B, NRPD1B, NRPE1, DMS5, Solyc01g096390

Description : subunit 1 of Pol V RNA polymerase


Gene families : OG0002547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g096390.4.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00068700 DRD3, ATNRPD1B,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 OrthoFinder output from all 47 species
AT1G63020 NRPD1A, POL IVA,... nuclear RNA polymerase D1A 0.05 OrthoFinder output from all 47 species
AT2G40030 DRD3, ATNRPD1B,... nuclear RNA polymerase D1B 0.06 OrthoFinder output from all 47 species
Adi_g023510 DRD3, ATNRPD1B,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23321 DRD3, ATNRPD1B,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.27G060600.1 DRD3, ATNRPD1B,... not classified & original description: pacid=50605432... 0.02 OrthoFinder output from all 47 species
Dac_g08006 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Dde_g23092 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g25284 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.04 OrthoFinder output from all 47 species
GSVIVT01013491001 DRD3, ATNRPD1B,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.09 OrthoFinder output from all 47 species
LOC_Os02g05880.1 DRD3, ATNRPD1B,... subunit 1 of Pol V RNA polymerase 0.09 OrthoFinder output from all 47 species
Len_g07261 NRPD1A, POL IVA,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20487 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.04 OrthoFinder output from all 47 species
MA_8720349g0010 DRD3, ATNRPD1B,... subunit 1 of Pol V RNA polymerase 0.02 OrthoFinder output from all 47 species
Mp6g00230.1 DRD3, ATNRPD1B,... subunit 1 of Pol IV RNA polymerase. subunit 1 of Pol V... 0.02 OrthoFinder output from all 47 species
Ppi_g38982 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g46354 NRPD1A, POL IVA,... component *(NRPE1) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Sam_g50713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e025206_P001 DRD3, ATNRPD1B,... subunit 1 of Pol V RNA polymerase 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006471 obsolete protein ADP-ribosylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 368 521
IPR007081 RNA_pol_Rpb1_5 798 1223
IPR007066 RNA_pol_Rpb1_3 526 670
IPR007080 RNA_pol_Rpb1_1 59 328
No external refs found!