Solyc01g103370.3.1 (ATFP8, RABD1,...)

Aliases : ATFP8, RABD1, ATRABD1, Solyc01g103370

Description : D-class RAB GTPase

Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g103370.3.1
Cluster	HCCA: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
Adi_g046907	RAB1C, ATRAB1C, ATRABD2C	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0027.g023703	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: CDS=1-693	0.03	OrthoFinder output from all 47 species
Cba_g55676	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.38G045700.1	RAB1C, ATRAB1C,...	D-class RAB GTPase & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001408.10	RAB1C, ATRAB1C, ATRABD2C	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Cre12.g560150	ATRAB1A, ATRABD2B, RAB1A	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Dcu_g23024	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g35830	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g31403	RAB1C, ATRAB1C, ATRABD2C	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01013868001	RAB1C, ATRAB1C, ATRABD2C	Vesicle trafficking.regulation of membrane tethering and...	0.09	OrthoFinder output from all 47 species
LOC_Os01g37800.1	ATRAB1B, RABD2A,...	D-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Len_g10682	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g06900	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Mp3g00710.1	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Msp_g29525	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g63621	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0127.g021845	ATRAB1A, ATRABD2B, RAB1A	not classified & original description: CDS=550-1089	0.02	OrthoFinder output from all 47 species
Zm00001e015303_P001	ATRAB1B, RABD2A,...	D-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	10	170

External Links

No external refs found!

Solyc01g103370.3.1 (ATFP8, RABD1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation