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  5. Solyc01g107290.3.1

Solyc01g107290.3.1 (Solyc01g107290)


Aliases : Solyc01g107290

Description : Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana (sp|q852u6|rhy1a_arath : 98.6)


Gene families : OG0000957 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000957_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g107290.3.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272380 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
AMTR_s00026p00191500 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT2G15580 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g082958 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g38055 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22504 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g57980 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g63256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g33853 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g23290 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g09704 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01037874001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.07 OrthoFinder output from all 47 species
Gb_25302 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os02g55480.1 LOC_Os02g55480 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os03g10890.1 LOC_Os03g10890 Probable E3 ubiquitin-protein ligase RHY1A... 0.03 OrthoFinder output from all 47 species
LOC_Os09g17610.1 LOC_Os09g17610 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os11g37230.1 LOC_Os11g37230 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g00422 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g15338 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp7g04520.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g08267 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g07226 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18831 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g28901 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g32906 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10810 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17376 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37088 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g007160.3.1 Solyc07g007160 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc07g007170.3.1 Solyc07g007170 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 229 271
No external refs found!