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  5. Solyc01g107880.3.1

Solyc01g107880.3.1 (Solyc01g107880)


Aliases : Solyc01g107880

Description : ubiquitin ligase component Doa10 of ER-associated protein degradation (ERAD) machinery


Gene families : OG0001940 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001940_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g107880.3.1
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AT4G34100 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g012557 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Adi_g016583 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g025191 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g055492 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Adi_g073698 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g49937 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Cba_g11850 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.05 OrthoFinder output from all 47 species
GSVIVT01031710001 No alias Protein degradation.ER-associated protein degradation... 0.03 OrthoFinder output from all 47 species
Gb_37944 No alias ubiquitin ligase component Doa10 of ER-associated... 0.03 OrthoFinder output from all 47 species
LOC_Os06g43210.1 LOC_Os06g43210 ubiquitin ligase component Doa10 of ER-associated... 0.03 OrthoFinder output from all 47 species
MA_130450g0010 No alias ubiquitin ligase component Doa10 of ER-associated... 0.04 OrthoFinder output from all 47 species
Mp2g15190.1 No alias ubiquitin ligase component Doa10 of ER-associated... 0.07 OrthoFinder output from all 47 species
Msp_g13590 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Ore_g38213 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016789 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.04 OrthoFinder output from all 47 species
Sam_g13533 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 70 116
No external refs found!