1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g109040.4.1

Solyc01g109040.4.1 (Solyc01g109040)


Aliases : Solyc01g109040

Description : component PetM/VII of cytochrome b6/f complex


Gene families : OG0007944 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007944_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g109040.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00208110 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.cytochrome b6/f... 0.05 OrthoFinder output from all 47 species
AT2G26500 No alias cytochrome b6f complex subunit (petM), putative 0.03 OrthoFinder output from all 47 species
Aev_g07600 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.03 OrthoFinder output from all 47 species
Ala_g12927 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.09 OrthoFinder output from all 47 species
Als_g54693 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.08 OrthoFinder output from all 47 species
Aop_g09963 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.15 OrthoFinder output from all 47 species
Aspi01Gene19184.t1 Aspi01Gene19184 component *(PetM/VII) of cytochrome b6/f complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0034.g025256 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.1 OrthoFinder output from all 47 species
Cba_g44231 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.02 OrthoFinder output from all 47 species
Ceric.32G011800.1 Ceric.32G011800 component *(PetM/VII) of cytochrome b6/f complex &... 0.08 OrthoFinder output from all 47 species
Dcu_g00281 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.04 OrthoFinder output from all 47 species
Dde_g41229 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.12 OrthoFinder output from all 47 species
GSVIVT01009587001 No alias Photosynthesis.photophosphorylation.cytochrome b6/f... 0.08 OrthoFinder output from all 47 species
Gb_00822 No alias component PetM/VII of cytochrome b6/f complex 0.09 OrthoFinder output from all 47 species
LOC_Os03g55720.2 LOC_Os03g55720 component PetM/VII of cytochrome b6/f complex 0.12 OrthoFinder output from all 47 species
Len_g11628 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.11 OrthoFinder output from all 47 species
Len_g11629 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.02 OrthoFinder output from all 47 species
Len_g29641 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.11 OrthoFinder output from all 47 species
MA_10294942g0010 No alias component PetM/VII of cytochrome b6/f complex 0.11 OrthoFinder output from all 47 species
Mp1g07170.1 No alias component PetM/VII of cytochrome b6/f complex 0.12 OrthoFinder output from all 47 species
Nbi_g20551 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.13 OrthoFinder output from all 47 species
Ore_g17180 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.06 OrthoFinder output from all 47 species
Pnu_g06190 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.03 OrthoFinder output from all 47 species
Pp3c6_20300V3.1 Pp3c6_20300 cytochrome b6f complex subunit (petM), putative 0.02 OrthoFinder output from all 47 species
Ppi_g55276 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007544 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.05 OrthoFinder output from all 47 species
Smo438339 No alias Photosynthesis.photophosphorylation.cytochrome b6/f... 0.06 OrthoFinder output from all 47 species
Tin_g27169 No alias component *(PetM/VII) of cytochrome b6/f complex &... 0.15 OrthoFinder output from all 47 species
Zm00001e011966_P002 Zm00001e011966 component PetM/VII of cytochrome b6/f complex 0.06 OrthoFinder output from all 47 species
Zm00001e011967_P001 Zm00001e011967 component PetM/VII of cytochrome b6/f complex 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009512 cytochrome b6f complex IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012595 PetM_cyt_b6/f_cplx_su7 90 117
No external refs found!