Aliases : Solyc01g109340
Description : RING-HC-class E3 ligase
Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc01g109340.4.1 | |
| Cluster | HCCA: Cluster_79 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00009p00264430 | evm_27.TU.AmTr_v1... | Protein degradation.peptide tagging.Ubiquitin... | 0.03 | OrthoFinder output from all 47 species | |
| AT2G23780 | No alias | RING/U-box superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g012747 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g024921 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g24081 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g10922 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g26221 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g05618 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g07901 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g70135 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene20236.t1 | Aspi01Gene20236 | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0043.g027095 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0159.g053943 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-882 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0983.g094326 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.18G044800.1 | RMA3, ATRMA3,... | E3 ubiquitin ligase *(RMA/MUSE) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.18G044900.1 | Ceric.18G044900 | E3 ubiquitin ligase *(RMA/MUSE) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.18G045400.1 | Ceric.18G045400 | E3 ubiquitin ligase *(RMA/MUSE) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.18G045500.1 | Ceric.18G045500 | E3 ubiquitin ligase *(RMA/MUSE) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000545.1 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g08588 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g20634 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g05375 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g11588 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Gb_19856 | No alias | RING-HC-class E3 ligase | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g44820.1 | RMA3, ATRMA3,... | RING-HC-class E3 ligase | 0.03 | OrthoFinder output from all 47 species | |
| Len_g01102 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g03115 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g10924 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Nbi_g28831 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g02908 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g21781 | RMA3, ATRMA3 | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g23747 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g35625 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g09287 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g62388 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0013.g005822 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-546 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0023.g008785 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-708 | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0042.g012732 | RMA3, ATRMA3 | E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-450 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g45037 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g065540.3.1 | Solyc02g065540 | RING-HC-class E3 ligase | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g05542 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g17089 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g19950 | No alias | E3 ubiquitin ligase *(RMA/MUSE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e003329_P001 | Zm00001e003329 | RING-HC-class E3 ligase | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e041298_P002 | RMA1, ATRMA1,... | RING-HC-class E3 ligase | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004180 | carboxypeptidase activity | IEP | HCCA |
| MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | HCCA |
| MF | GO:0004672 | protein kinase activity | IEP | HCCA |
| MF | GO:0004857 | enzyme inhibitor activity | IEP | HCCA |
| MF | GO:0005507 | copper ion binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006468 | protein phosphorylation | IEP | HCCA |
| BP | GO:0006508 | proteolysis | IEP | HCCA |
| BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008233 | peptidase activity | IEP | HCCA |
| MF | GO:0008236 | serine-type peptidase activity | IEP | HCCA |
| MF | GO:0008238 | exopeptidase activity | IEP | HCCA |
| MF | GO:0016301 | kinase activity | IEP | HCCA |
| BP | GO:0016310 | phosphorylation | IEP | HCCA |
| MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0017171 | serine hydrolase activity | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| MF | GO:0030234 | enzyme regulator activity | IEP | HCCA |
| MF | GO:0030599 | pectinesterase activity | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| BP | GO:0042545 | cell wall modification | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | HCCA |
| BP | GO:0055114 | obsolete oxidation-reduction process | IEP | HCCA |
| MF | GO:0070008 | serine-type exopeptidase activity | IEP | HCCA |
| BP | GO:0071554 | cell wall organization or biogenesis | IEP | HCCA |
| BP | GO:0071555 | cell wall organization | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| MF | GO:0098772 | molecular function regulator activity | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
| MF | GO:0140678 | molecular function inhibitor activity | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |
