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  5. Solyc01g111300.4.1

Solyc01g111300.4.1 (GRP2B, ATGRP2B,...)


Aliases : GRP2B, ATGRP2B, ATCSP4, Solyc01g111300

Description : RNA chaperone (CSP). mRNA chaperone (CSD)


Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g111300.4.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT2G17870 ATCSP3, CSP3 cold shock domain protein 3 0.04 OrthoFinder output from all 47 species
AT2G21060 GRP2B, ATGRP2B, ATCSP4 glycine-rich protein 2B 0.03 OrthoFinder output from all 47 species
AT4G38680 ATCSP2, GRP2, CSDP2, CSP2 glycine rich protein 2 0.07 OrthoFinder output from all 47 species
Aop_g09578 No alias RNA chaperone (CSP) of mRNA quality control & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.10 No alias Cold shock protein 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_15589 ATCSP2, GRP2, CSDP2, CSP2 RNA chaperone (CSP). mRNA chaperone (CSD) 0.03 OrthoFinder output from all 47 species
LOC_Os08g03520.1 GRP2B, ATGRP2B,... RNA chaperone (CSP). mRNA chaperone (CSD) 0.03 OrthoFinder output from all 47 species
Lfl_g27133 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g06164 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Pp3c5_7920V3.1 GRP2B, ATGRP2B,... cold shock domain protein 1 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g003991 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010185 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0173.g024476 ATCSP3, CSP3 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e041725_P001 CSDP1, Zm00001e041725 RNA chaperone (CSP). mRNA chaperone (CSD) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 10 74
IPR001878 Znf_CCHC 126 142
IPR001878 Znf_CCHC 172 188
No external refs found!