1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc02g021650.3.1

Solyc02g021650.3.1 (DDB1A, Solyc02g021650)


Aliases : DDB1A, Solyc02g021650

Description : component DDB1 of UV-damaged DNA-binding protein (UV-DDB) heterodimer. core adaptor component DDB1 of COP10-DET1 (CDD) subcomplex. core adapter component (DDB1) of CUL4-DDB1 ubiquitination complex


Gene families : OG0004030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004030_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g021650.3.1

Target Alias Description ECC score Gene Family Method Actions
AT4G05420 DDB1A damaged DNA binding protein 1A 0.05 OrthoFinder output from all 47 species
AT4G21100 DDB1B damaged DNA binding protein 1B 0.05 OrthoFinder output from all 47 species
Adi_g015691 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Aev_g07979 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Als_g03248 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Aop_g09805 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.04 OrthoFinder output from all 47 species
Ceric.30G020500.1 DDB1A, Ceric.30G020500 core adaptor component *(DDB1) of CUL4-based E3... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000851.24 DDB1A Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Cre10.g432000 DDB1A Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Dcu_g08979 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Dde_g02981 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.04 OrthoFinder output from all 47 species
Ehy_g01666 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.04 OrthoFinder output from all 47 species
GSVIVT01021587001 DDB1A Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Gb_27300 DDB1A component DDB1 of UV-damaged DNA-binding protein... 0.03 OrthoFinder output from all 47 species
Gb_36569 DDB1A component DDB1 of UV-damaged DNA-binding protein... 0.03 OrthoFinder output from all 47 species
LOC_Os05g51480.1 DDB1A, LOC_Os05g51480 component DDB1 of UV-damaged DNA-binding protein... 0.09 OrthoFinder output from all 47 species
Lfl_g16439 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
MA_41156g0010 DDB1A component DDB1 of UV-damaged DNA-binding protein... 0.04 OrthoFinder output from all 47 species
Mp4g15990.1 DDB1A component DDB1 of UV-damaged DNA-binding protein... 0.04 OrthoFinder output from all 47 species
Msp_g02097 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Ore_g15533 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0201.g025613 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Smo145521 DDB1A Protein degradation.peptide tagging.Ubiquitin... 0.07 OrthoFinder output from all 47 species
Spa_g04425 DDB1A core adaptor component *(DDB1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Zm00001e026665_P002 DDB1A, Zm00001e026665 component DDB1 of UV-damaged DNA-binding protein... 0.06 OrthoFinder output from all 47 species
Zm00001e032569_P002 DDB1A, Zm00001e032569 component DDB1 of UV-damaged DNA-binding protein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0008064 regulation of actin polymerization or depolymerization IEP HCCA
MF GO:0008172 S-methyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0030832 regulation of actin filament length IEP HCCA
BP GO:0030833 regulation of actin filament polymerization IEP HCCA
BP GO:0032271 regulation of protein polymerization IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0032956 regulation of actin cytoskeleton organization IEP HCCA
BP GO:0032970 regulation of actin filament-based process IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP HCCA
BP GO:0043254 regulation of protein-containing complex assembly IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051493 regulation of cytoskeleton organization IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
BP GO:0110053 regulation of actin filament organization IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1902903 regulation of supramolecular fiber organization IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 751 1064
No external refs found!