Solyc02g030110.2.1 (ATVPS54, VPS54, Solyc02g030110)

Aliases : ATVPS54, VPS54, Solyc02g030110

Description : GARP-specific component VPS54 of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes

Gene families : OG0004672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004672_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g030110.2.1

Target	Alias	Description	ECC score	Gene Family Method
AT4G19490	ATVPS54, VPS54	VPS54	0.03	OrthoFinder output from all 47 species
Adi_g063596	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.04	OrthoFinder output from all 47 species
Ala_g02680	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.05	OrthoFinder output from all 47 species
Als_g05127	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Aop_g08788	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.02	OrthoFinder output from all 47 species
Aspi01Gene49548.t1	ATVPS54, VPS54,...	GARP-specific component *(VPS54) of GARP/EARP...	0.02	OrthoFinder output from all 47 species
Ceric.15G033300.1	ATVPS54, VPS54,...	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Cre02.g087551	ATVPS54, VPS54	Vesicle trafficking.target membrane tethering.GARP/EARP...	0.01	OrthoFinder output from all 47 species
Dcu_g12433	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.04	OrthoFinder output from all 47 species
Ehy_g06203	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Gb_03763	ATVPS54, VPS54	GARP-specific component VPS54 of GARP/EARP...	0.04	OrthoFinder output from all 47 species
LOC_Os04g13470.1	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.08	OrthoFinder output from all 47 species
Lfl_g02410	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.02	OrthoFinder output from all 47 species
MA_418299g0010	ATVPS54, VPS54	GARP-specific component VPS54 of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Mp5g09490.1	ATVPS54, VPS54	GARP-specific component VPS54 of GARP/EARP...	0.04	OrthoFinder output from all 47 species
Msp_g23962	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.02	OrthoFinder output from all 47 species
Nbi_g16046	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Pir_g01065	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Tin_g22745	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.04	OrthoFinder output from all 47 species
Zm00001e008702_P001	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.08	OrthoFinder output from all 47 species
Zm00001e040599_P001	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	Interproscan
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
CC	GO:0017119	Golgi transport complex	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
CC	GO:0033179	proton-transporting V-type ATPase, V0 domain	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0071805	potassium ion transmembrane transport	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012501	Vps54_C	504	635

External Links

No external refs found!

Solyc02g030110.2.1 (ATVPS54, VPS54, Solyc02g030110)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation