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  5. Solyc02g038816.1.1

Solyc02g038816.1.1 (Solyc02g038816)


Aliases : Solyc02g038816

Description : no hits & (original description: none)


Gene families : OG0000563 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000563_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g038816.1.1
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
Adi_g014576 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13060 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09399 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.21G068400.1 Ceric.21G068400 not classified & original description: pacid=50603032... 0.03 OrthoFinder output from all 47 species
Ceric.23G036900.1 Ceric.23G036900 not classified & original description: pacid=50610458... 0.04 OrthoFinder output from all 47 species
Cre07.g352650 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre12.g549100 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g01602 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09258 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g13837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04137 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp3g08570.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g12927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03072 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g54015 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e026627_P001 Zm00001e026627 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e032554_P001 Zm00001e032554 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 178 245
IPR000504 RRM_dom 62 124
No external refs found!