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  5. Solyc02g067800.4.1

Solyc02g067800.4.1 (LBD25, Solyc02g067800)


Aliases : LBD25, Solyc02g067800

Description : transcription factor (AS2/LOB)


Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g067800.4.1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AT2G28500 LBD11 LOB domain-containing protein 11 0.02 OrthoFinder output from all 47 species
Adi_g113714 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g116107 LBD20 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g00680 AS2 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g38835 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g03506 LBD12, ASL5, PCK1 AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g00489 LOB AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g11371 LOB AS2/LOB-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g05610 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g09772 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g21579 AS2 AS2/LOB-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g28141 LBD4 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70670 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene41937.t1 AS2, Aspi01Gene41937 AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene64104.t1 AS2, Aspi01Gene64104 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene69867.t1 LBD15, ASL11,... AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g24489 LOB AS2/LOB-type transcription factor & original description: none 0.11 OrthoFinder output from all 47 species
Cba_g36506 LOB AS2/LOB-type transcription factor & original description: none 0.11 OrthoFinder output from all 47 species
Ceric.01G082500.1 LOB, Ceric.01G082500 AS2/LOB-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.12G084800.1 LBD25, Ceric.12G084800 AS2/LOB-type transcription factor & original... 0.07 OrthoFinder output from all 47 species
Dcu_g25272 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g26972 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003548001 ASL1, LBD36 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 OrthoFinder output from all 47 species
GSVIVT01007677001 LOB RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01013631001 LBD4 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01024662001 LBD12, ASL5, PCK1 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01025128001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.08 OrthoFinder output from all 47 species
GSVIVT01027621001 LBD18 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
GSVIVT01032415001 LOB RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 OrthoFinder output from all 47 species
Gb_19390 LBD4 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
LOC_Os01g07480.2 LOB, LOC_Os01g07480 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
LOC_Os03g14270.1 LBD18, LOC_Os03g14270 transcription factor (AS2/LOB) 0.11 OrthoFinder output from all 47 species
Len_g16017 AS2 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20443 AS2 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g08340 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g29029 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_101817g0010 LBD29, ASL16 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
MA_136689g0010 LBD4 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
MA_6918261g0010 LBD29, ASL16 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Msp_g43952 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g00488 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g00674 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42314 LBD4 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57178 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g069440.3.1 LBD4, Solyc02g069440 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc06g007390.4.1 LBD15, ASL11,... transcription factor (AS2/LOB) 0.08 OrthoFinder output from all 47 species
Solyc09g066260.4.1 LBD16, ASL18,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc11g045530.3.1 LBD4, Solyc11g045530 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
Spa_g16209 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g40680 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001031_P001 LBD18, Zm00001e001031 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e016785_P005 LOB, Zm00001e016785 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Zm00001e028582_P007 AS2, Zm00001e028582 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Zm00001e031510_P001 LBD12, ASL5,... transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Zm00001e042348_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 11 107
No external refs found!