Solyc02g078830.4.1 (Solyc02g078830)


Aliases : Solyc02g078830

Description : no hits & (original description: none)


Gene families : OG0005154 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005154_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g078830.4.1

Target Alias Description ECC score Gene Family Method Actions
AT1G65030 No alias Transducin/WD40 repeat-like superfamily protein 0.03 OrthoFinder output from all 47 species
Als_g01721 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ceric.13G020800.1 Ceric.13G020800 substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
LOC_Os12g42150.1 LOC_Os12g42150 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp1g21630.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Nbi_g11651 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Sam_g06655 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 30 64
IPR001680 WD40_repeat 269 284
IPR001680 WD40_repeat 75 110
No external refs found!