1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc02g085790.3.1

Solyc02g085790.3.1 (Solyc02g085790)


Aliases : Solyc02g085790

Description : CCT6 subunit zeta of CCT chaperonin folding complex


Gene families : OG0003995 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003995_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g085790.3.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00116290 evm_27.TU.AmTr_v1... Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.06 OrthoFinder output from all 47 species
AMTR_s00002p00117080 evm_27.TU.AmTr_v1... Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.02 OrthoFinder output from all 47 species
AMTR_s00010p00016450 evm_27.TU.AmTr_v1... Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.09 OrthoFinder output from all 47 species
AT3G02530 No alias TCP-1/cpn60 chaperonin family protein 0.06 OrthoFinder output from all 47 species
AT5G16070 No alias TCP-1/cpn60 chaperonin family protein 0.07 OrthoFinder output from all 47 species
Adi_g117522 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Aev_g21281 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Aop_g03812 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene55303.t1 Aspi01Gene55303 subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.02 OrthoFinder output from all 47 species
Azfi_s0038.g026142 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.04 OrthoFinder output from all 47 species
Ceric.16G067100.1 Ceric.16G067100 subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000789.37 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.03 OrthoFinder output from all 47 species
Cre09.g397200 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.05 OrthoFinder output from all 47 species
Dac_g39546 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.02 OrthoFinder output from all 47 species
Dcu_g14364 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.08 OrthoFinder output from all 47 species
GSVIVT01031067001 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.07 OrthoFinder output from all 47 species
Gb_18443 No alias CCT6 subunit zeta of CCT chaperonin folding complex 0.06 OrthoFinder output from all 47 species
LOC_Os05g05470.1 LOC_Os05g05470 CCT6 subunit zeta of CCT chaperonin folding complex 0.08 OrthoFinder output from all 47 species
Len_g12186 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.02 OrthoFinder output from all 47 species
MA_121254g0010 No alias T-complex protein 1 subunit zeta 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_8438g0020 No alias CCT6 subunit zeta of CCT chaperonin folding complex 0.03 OrthoFinder output from all 47 species
MA_94211g0010 No alias T-complex protein 1 subunit zeta 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp8g07530.1 No alias CCT6 subunit zeta of CCT chaperonin folding complex 0.06 OrthoFinder output from all 47 species
Nbi_g06183 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Ore_g33910 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.07 OrthoFinder output from all 47 species
Pir_g15622 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Pp3c11_26000V3.1 Pp3c11_26000 TCP-1/cpn60 chaperonin family protein 0.02 OrthoFinder output from all 47 species
Sam_g06491 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.02 OrthoFinder output from all 47 species
Sam_g37510 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.04 OrthoFinder output from all 47 species
Smo158120 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.03 OrthoFinder output from all 47 species
Spa_g18568 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Spa_g18569 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.04 OrthoFinder output from all 47 species
Tin_g00936 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e010996_P001 Zm00001e010996 CCT6 subunit zeta of CCT chaperonin folding complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR002423 Cpn60/GroEL/TCP-1 29 528
No external refs found!