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  5. Solyc02g088070.3.1

Solyc02g088070.3.1 (CDF3, Solyc02g088070)


Aliases : CDF3, Solyc02g088070

Description : transcription factor (DOF)


Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g088070.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00248860 TMO6,... RNA biosynthesis.transcriptional activation.C2C2... 0.01 OrthoFinder output from all 47 species
AMTR_s00010p00264070 CDF3,... RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
AT1G26790 No alias Dof-type zinc finger DNA-binding family protein 0.07 OrthoFinder output from all 47 species
AT5G62430 CDF1 cycling DOF factor 1 0.04 OrthoFinder output from all 47 species
Adi_g007049 CDF2 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g079893 TMO6 transcription factor *(DOF) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g11998 TMO6 transcription factor *(DOF) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g01888 CDF3 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11020 CDF2 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04142 TMO6 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13553.t1 CDF3, Aspi01Gene13553 transcription factor *(DOF) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene55828.t1 CDF2, Aspi01Gene55828 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0054.g033832 CDF3 transcription factor *(DOF) & original description: CDS=354-1853 0.01 OrthoFinder output from all 47 species
Ceric.24G054400.1 Ceric.24G054400 transcription factor *(DOF) & original description:... 0.03 OrthoFinder output from all 47 species
Dde_g25853 TMO6 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04712 TMO6 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12009 DOF2.4, ATDOF2.4 transcription factor *(DOF) & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g26661 No alias transcription factor *(DOF) & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g26839 CDF1 transcription factor *(DOF) & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01011433001 CDF2 RNA biosynthesis.transcriptional activation.C2C2... 0.07 OrthoFinder output from all 47 species
GSVIVT01019969001 CDF1 RNA biosynthesis.transcriptional activation.C2C2... 0.07 OrthoFinder output from all 47 species
GSVIVT01029943001 CDF3 RNA biosynthesis.transcriptional activation.C2C2... 0.14 OrthoFinder output from all 47 species
Gb_07177 CDF2 transcription factor (DOF) 0.05 OrthoFinder output from all 47 species
LOC_Os01g15900.1 CDF2, LOC_Os01g15900 transcription factor (DOF) 0.01 OrthoFinder output from all 47 species
LOC_Os10g26620.1 CDF1, LOC_Os10g26620 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Len_g15959 TMO6 transcription factor *(DOF) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19257 OBP3 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g30040 CDF2 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03006 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
MA_175298g0010 CDF2 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
MA_2430g0010 CDF3 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Ore_g32242 TMO6 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42292 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13474 No alias transcription factor *(DOF) & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008681 ADOF1, DOF1 transcription factor *(DOF) & original description: CDS=453-2084 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0148.g023228 No alias transcription factor *(DOF) & original description: CDS=1-1353 0.02 OrthoFinder output from all 47 species
Smo89924 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.01 OrthoFinder output from all 47 species
Solyc06g069760.3.1 CDF3, Solyc06g069760 transcription factor (DOF) 0.11 OrthoFinder output from all 47 species
Tin_g10425 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14914 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e017319_P001 CDF2, Zm00001e017319 transcription factor (DOF) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
InterPro domains Description Start Stop
IPR003851 Znf_Dof 108 164
No external refs found!