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  5. Solyc02g089130.4.1

Solyc02g089130.4.1 (IRX6, COBL4, Solyc02g089130)


Aliases : IRX6, COBL4, Solyc02g089130

Description : COB cellulose microfibrils and hemicellulose interaction protein


Gene families : OG0000498 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000498_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g089130.4.1
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00083860 COB,... Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.04 OrthoFinder output from all 47 species
AMTR_s00047p00216570 IRX6, COBL4,... Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.12 OrthoFinder output from all 47 species
AMTR_s00066p00182490 COBL10,... Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 OrthoFinder output from all 47 species
AT3G20580 COBL10 COBRA-like protein 10 precursor 0.03 OrthoFinder output from all 47 species
AT4G27110 COBL11 COBRA-like protein 11 precursor 0.04 OrthoFinder output from all 47 species
AT5G15630 IRX6, COBL4 COBRA-like extracellular glycosyl-phosphatidyl... 0.16 OrthoFinder output from all 47 species
AT5G49270 COBL9, MRH4, SHV2, DER9 COBRA-like extracellular glycosyl-phosphatidyl... 0.06 OrthoFinder output from all 47 species
AT5G60920 COB COBRA-like extracellular glycosyl-phosphatidyl... 0.04 OrthoFinder output from all 47 species
Adi_g021950 SEB1, COBL7, ATSEB1 regulatory protein *(COB) of cellulose-hemicellulose... 0.02 OrthoFinder output from all 47 species
Adi_g082871 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.02 OrthoFinder output from all 47 species
Adi_g115193 COBL2 regulatory protein *(COB) of cellulose-hemicellulose... 0.02 OrthoFinder output from all 47 species
Aev_g10925 SEB1, COBL7, ATSEB1 regulatory protein *(COB) of cellulose-hemicellulose... 0.04 OrthoFinder output from all 47 species
Aev_g17419 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.04 OrthoFinder output from all 47 species
Ala_g14783 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.02 OrthoFinder output from all 47 species
Als_g00864 No alias regulatory protein *(COB) of cellulose-hemicellulose... 0.04 OrthoFinder output from all 47 species
Als_g04400 COBL11 regulatory protein *(COB) of cellulose-hemicellulose... 0.04 OrthoFinder output from all 47 species
Als_g15085 COBL2 regulatory protein *(COB) of cellulose-hemicellulose... 0.05 OrthoFinder output from all 47 species
Als_g32496 SEB1, COBL7, ATSEB1 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Aob_g14283 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.06 OrthoFinder output from all 47 species
Aob_g19185 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.04 OrthoFinder output from all 47 species
Aop_g12365 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.04 OrthoFinder output from all 47 species
Aspi01Gene03097.t1 COBL1, Aspi01Gene03097 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Aspi01Gene35118.t1 COBL2, Aspi01Gene35118 regulatory protein *(COB) of cellulose-hemicellulose... 0.06 OrthoFinder output from all 47 species
Azfi_s0051.g031370 SEB1, COBL7, ATSEB1 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036477 COBL2 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Cba_g13589 SEB1, COBL7, ATSEB1 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Ceric.16G001100.1 COB, Ceric.16G001100 regulatory protein *(COB) of cellulose-hemicellulose... 0.06 OrthoFinder output from all 47 species
Ceric.25G025100.1 COBL2, Ceric.25G025100 regulatory protein *(COB) of cellulose-hemicellulose... 0.05 OrthoFinder output from all 47 species
Ceric.30G011700.1 SEB1, COBL7,... regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Ceric.33G061400.1 COB, Ceric.33G061400 regulatory protein *(COB) of cellulose-hemicellulose... 0.04 OrthoFinder output from all 47 species
Dac_g00727 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.05 OrthoFinder output from all 47 species
Dac_g05120 SEB1, COBL7, ATSEB1 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Dac_g14621 COBL2 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Dac_g15805 COBL1 regulatory protein *(COB) of cellulose-hemicellulose... 0.07 OrthoFinder output from all 47 species
Dcu_g01030 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.09 OrthoFinder output from all 47 species
Dcu_g40673 COBL2 regulatory protein *(COB) of cellulose-hemicellulose... 0.04 OrthoFinder output from all 47 species
Dde_g26915 COBL1 regulatory protein *(COB) of cellulose-hemicellulose... 0.04 OrthoFinder output from all 47 species
Ehy_g05951 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
GSVIVT01008128001 COB Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.03 OrthoFinder output from all 47 species
GSVIVT01008129001 IRX6, COBL4 Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.16 OrthoFinder output from all 47 species
GSVIVT01012641001 COBL10 Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.03 OrthoFinder output from all 47 species
GSVIVT01035050001 SEB1, COBL7, ATSEB1 Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.03 OrthoFinder output from all 47 species
GSVIVT01036565001 IRX6, COBL4 Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.13 OrthoFinder output from all 47 species
GSVIVT01036566001 COB Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.04 OrthoFinder output from all 47 species
Gb_32178 SEB1, COBL7, ATSEB1 COB cellulose microfibrils and hemicellulose interaction protein 0.04 OrthoFinder output from all 47 species
Gb_36719 IRX6, COBL4 COB cellulose microfibrils and hemicellulose interaction protein 0.06 OrthoFinder output from all 47 species
LOC_Os03g18910.1 SEB1, COBL7,... COB cellulose microfibrils and hemicellulose interaction protein 0.03 OrthoFinder output from all 47 species
LOC_Os03g30250.1 IRX6, COBL4,... COB cellulose microfibrils and hemicellulose interaction protein 0.14 OrthoFinder output from all 47 species
LOC_Os03g54750.1 COB, LOC_Os03g54750 COB cellulose microfibrils and hemicellulose interaction protein 0.03 OrthoFinder output from all 47 species
LOC_Os05g32110.1 COB, LOC_Os05g32110 COB cellulose microfibrils and hemicellulose interaction protein 0.11 OrthoFinder output from all 47 species
LOC_Os06g47110.1 COBL10, LOC_Os06g47110 COB cellulose microfibrils and hemicellulose interaction protein 0.03 OrthoFinder output from all 47 species
LOC_Os07g41320.1 IRX6, COBL4,... COB cellulose microfibrils and hemicellulose interaction protein 0.1 OrthoFinder output from all 47 species
Len_g16254 COBL2 regulatory protein *(COB) of cellulose-hemicellulose... 0.08 OrthoFinder output from all 47 species
Lfl_g07759 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Lfl_g08339 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.02 OrthoFinder output from all 47 species
Lfl_g12946 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Lfl_g28447 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.02 OrthoFinder output from all 47 species
MA_106654g0010 COB COB cellulose microfibrils and hemicellulose interaction protein 0.03 OrthoFinder output from all 47 species
MA_4056g0010 COB COB cellulose microfibrils and hemicellulose interaction protein 0.05 OrthoFinder output from all 47 species
MA_40967g0020 COB COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from all 47 species
MA_637485g0010 IRX6, COBL4 COB cellulose microfibrils and hemicellulose interaction protein 0.08 OrthoFinder output from all 47 species
Mp1g17600.1 COBL11 COB cellulose microfibrils and hemicellulose interaction protein 0.04 OrthoFinder output from all 47 species
Mp7g06600.1 COBL1 COB cellulose microfibrils and hemicellulose interaction protein 0.04 OrthoFinder output from all 47 species
Msp_g13737 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.02 OrthoFinder output from all 47 species
Msp_g26241 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.07 OrthoFinder output from all 47 species
Nbi_g08845 COBL1 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Ore_g28352 COBL2 regulatory protein *(COB) of cellulose-hemicellulose... 0.1 OrthoFinder output from all 47 species
Ore_g34445 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.05 OrthoFinder output from all 47 species
Pnu_g12421 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.06 OrthoFinder output from all 47 species
Pp3c4_14561V3.1 Pp3c4_14561 No annotation 0.02 OrthoFinder output from all 47 species
Ppi_g06855 COBL1 regulatory protein *(COB) of cellulose-hemicellulose... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0125.g021681 IRX6, COBL4 regulatory protein *(COB) of cellulose-hemicellulose... 0.04 OrthoFinder output from all 47 species
Smo271954 COBL1 Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.05 OrthoFinder output from all 47 species
Solyc01g103877.1.1 COBL6, Solyc01g103877 COB cellulose microfibrils and hemicellulose interaction protein 0.04 OrthoFinder output from all 47 species
Spa_g13676 COBL1 regulatory protein *(COB) of cellulose-hemicellulose... 0.08 OrthoFinder output from all 47 species
Spa_g24271 COBL1 regulatory protein *(COB) of cellulose-hemicellulose... 0.07 OrthoFinder output from all 47 species
Tin_g12333 COBL1 regulatory protein *(COB) of cellulose-hemicellulose... 0.05 OrthoFinder output from all 47 species
Tin_g29852 COBL2 regulatory protein *(COB) of cellulose-hemicellulose... 0.05 OrthoFinder output from all 47 species
Zm00001e001386_P001 SEB1, COBL7,... COB cellulose microfibrils and hemicellulose interaction protein 0.03 OrthoFinder output from all 47 species
Zm00001e012022_P001 COB, Zm00001e012022 COB cellulose microfibrils and hemicellulose interaction protein 0.04 OrthoFinder output from all 47 species
Zm00001e035505_P001 IRX6, COBL4,... COB cellulose microfibrils and hemicellulose interaction protein 0.2 OrthoFinder output from all 47 species
Zm00001e038043_P001 IRX6, COBL4,... COB cellulose microfibrils and hemicellulose interaction protein 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0010215 cellulose microfibril organization IEA Interproscan
CC GO:0031225 obsolete anchored component of membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR006918 COBRA_pln 45 208
No external refs found!