Aliases : SHR, SGR7, Solyc02g092370
Description : transcription factor (GRAS). SHR gravity signalling transcription factor
Gene families : OG0003562 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003562_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc02g092370.1.1 | |
| Cluster | HCCA: Cluster_30 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00066p00182770 | SHR, SGR7,... | External stimuli response.gravity.sensing and... | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00086p00066190 | SHR, SGR7,... | External stimuli response.gravity.sensing and... | 0.03 | OrthoFinder output from all 47 species | |
| AT4G37650 | SHR, SGR7 | GRAS family transcription factor | 0.06 | OrthoFinder output from all 47 species | |
| Adi_g041481 | SHR, SGR7 | GRAS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g082025 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g089021 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g17904 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.06 | OrthoFinder output from all 47 species | |
| Aop_g04274 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene53173.t1 | SHR, SGR7,... | gravity signalling transcription factor *(SHR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g08230 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.38G001000.1 | SHR, SGR7,... | gravity signalling transcription factor *(SHR) &... | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g14496 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g29734 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01000107001 | SHR, SGR7 | External stimuli response.gravity.sensing and... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01004104001 | SHR, SGR7 | External stimuli response.gravity.sensing and... | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os03g31880.1 | SHR, SGR7, LOC_Os03g31880 | transcription factor (GRAS). SHR gravity signalling... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os07g39820.1 | SHR, SGR7, LOC_Os07g39820 | transcription factor (GRAS). SHR gravity signalling... | 0.05 | OrthoFinder output from all 47 species | |
| Len_g46830 | SHR, SGR7 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g33336 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc08g014030.1.1 | SHR, SGR7, Solyc08g014030 | transcription factor (GRAS). SHR gravity signalling... | 0.11 | OrthoFinder output from all 47 species | |
| Zm00001e002085_P001 | SHR, SGR7, Zm00001e002085 | transcription factor (GRAS). SHR gravity signalling... | 0.07 | OrthoFinder output from all 47 species | |
| Zm00001e010666_P001 | SHR, SGR7, Zm00001e010666 | transcription factor (GRAS). SHR gravity signalling... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e035411_P001 | SHR, SGR7, Zm00001e035411 | transcription factor (GRAS). SHR gravity signalling... | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
| MF | GO:0004252 | serine-type endopeptidase activity | IEP | HCCA |
| MF | GO:0004672 | protein kinase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006468 | protein phosphorylation | IEP | HCCA |
| BP | GO:0006508 | proteolysis | IEP | HCCA |
| BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| MF | GO:0008233 | peptidase activity | IEP | HCCA |
| MF | GO:0008236 | serine-type peptidase activity | IEP | HCCA |
| BP | GO:0009605 | response to external stimulus | IEP | HCCA |
| BP | GO:0009606 | tropism | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010274 | hydrotropism | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0016301 | kinase activity | IEP | HCCA |
| BP | GO:0016310 | phosphorylation | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
| MF | GO:0017171 | serine hydrolase activity | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005202 | TF_GRAS | 129 | 506 |
| No external refs found! |
