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  5. Solyc02g094480.4.1

Solyc02g094480.4.1 (Solyc02g094480)


Aliases : Solyc02g094480

Description : RNA editing factor (MEF14)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g094480.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272900 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 OrthoFinder output from all 47 species
AMTR_s00061p00035580 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.03 OrthoFinder output from all 47 species
AT1G05750 PDE247, CLB19 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004364 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g056630 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060808 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099319 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102724 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g115114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g27648 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17028 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20750 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26015 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene00209.t1 EMB2758, Aspi01Gene00209 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene18986.t1 MEF21, Aspi01Gene18986 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04668 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20476 MEF22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g22830 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24367 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.26G013000.1 Ceric.26G013000 not classified & original description: pacid=50600010... 0.03 OrthoFinder output from all 47 species
Dac_g05106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42997 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08616 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05342 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17539 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g40545 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17807 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31027 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04775 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05045 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09843 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g48712 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g21363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38648 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g21989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23513 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03353 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002433 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005803 No alias not classified & original description: CDS=32-2446 0.02 OrthoFinder output from all 47 species
Sam_g19039 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo92008 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 OrthoFinder output from all 47 species
Spa_g20734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55551 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06393 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29179 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 627 652
IPR002885 Pentatricopeptide_repeat 525 551
IPR002885 Pentatricopeptide_repeat 452 480
IPR002885 Pentatricopeptide_repeat 830 854
IPR002885 Pentatricopeptide_repeat 553 578
IPR002885 Pentatricopeptide_repeat 655 679
IPR013078 His_Pase_superF_clade-1 114 252
IPR032867 DYW_dom 928 1052
IPR002885 Pentatricopeptide_repeat 754 801
No external refs found!