Solyc03g006120.4.1 (Solyc03g006120)

Aliases : Solyc03g006120

Description : transcription factor (DOG)

Gene families : OG0001119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001119_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g006120.4.1
Cluster	HCCA: Cluster_111

Target	Alias	Description	ECC score	Gene Family Method
AT3G14880	No alias	BEST Arabidopsis thaliana protein match is:...	0.04	OrthoFinder output from all 47 species
AT4G18650	No alias	transcription factor-related	0.06	OrthoFinder output from all 47 species
AT4G18660	No alias	unknown protein; BEST Arabidopsis thaliana protein match...	0.21	OrthoFinder output from all 47 species
AT4G18680	No alias	unknown protein; BEST Arabidopsis thaliana protein match...	0.24	OrthoFinder output from all 47 species
AT4G18690	No alias	unknown protein; BEST Arabidopsis thaliana protein match...	0.02	OrthoFinder output from all 47 species
AT5G45830	GSQ5, DOG1, ATDOG1	delay of germination 1	0.02	OrthoFinder output from all 47 species
Dac_g31901	No alias	DOG-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g24749	No alias	DOG-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01021229001	No alias	Protein DOG1-like 4 OS=Arabidopsis thaliana	0.08	OrthoFinder output from all 47 species
GSVIVT01022365001	No alias	RNA biosynthesis.transcriptional activation.bZIP...	0.17	OrthoFinder output from all 47 species
Gb_17808	No alias	transcription factor (DOG)	0.02	OrthoFinder output from all 47 species
LOC_Os05g48650.1	LOC_Os05g48650	transcription factor (DOG)	0.15	OrthoFinder output from all 47 species
Len_g27664	No alias	DOG-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g22337	GSQ5, DOG1, ATDOG1	DOG-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Pnu_g27300	No alias	DOG-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g28827	No alias	DOG-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g073580.1.1	Solyc02g073580	transcription factor (DOG)	0.01	OrthoFinder output from all 47 species
Solyc09g005610.4.1	RAS1, Solyc09g005610	transcription factor (DOG)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004356	glutamate-ammonia ligase activity	IEP	HCCA
BP	GO:0006541	glutamine metabolic process	IEP	HCCA
BP	GO:0006542	glutamine biosynthetic process	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016211	ammonia ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025422	TGA_domain	26	104

External Links

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Solyc03g006120.4.1 (Solyc03g006120)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation