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  5. Solyc03g007100.3.1

Solyc03g007100.3.1 (ATCPSF160, CPSF160,...)


Aliases : ATCPSF160, CPSF160, Solyc03g007100

Description : component CPSF160/Yhh1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0003336 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003336_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g007100.3.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00037520 ATCPSF160,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.06 OrthoFinder output from all 47 species
AT5G51660 ATCPSF160, CPSF160 cleavage and polyadenylation specificity factor 160 0.11 OrthoFinder output from all 47 species
Adi_g021155 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ala_g19211 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Als_g01205 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Aop_g06976 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Aspi01Gene26799.t1 ATCPSF160,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55703.t1 ATCPSF160,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0079.g038419 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Cba_g37162 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Ceric.05G035200.1 ATCPSF160,... component *(CPSF160/Yhh1) of Cleavage and... 0.1 OrthoFinder output from all 47 species
Ehy_g15463 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
GSVIVT01018506001 ATCPSF160, CPSF160 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.12 OrthoFinder output from all 47 species
Gb_25541 ATCPSF160, CPSF160 Cleavage and polyadenylation specificity factor subunit... 0.02 OrthoFinder output from all 47 species
LOC_Os04g18010.1 ATCPSF160,... component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Len_g23442 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
MA_10435523g0020 ATCPSF160, CPSF160 Cleavage and polyadenylation specificity factor subunit... 0.04 OrthoFinder output from all 47 species
MA_169369g0010 ATCPSF160, CPSF160 Cleavage and polyadenylation specificity factor subunit... 0.06 OrthoFinder output from all 47 species
MA_9146756g0010 ATCPSF160, CPSF160 Cleavage and polyadenylation specificity factor subunit... 0.02 OrthoFinder output from all 47 species
Msp_g15040 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Nbi_g12582 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ore_g06583 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.06 OrthoFinder output from all 47 species
Ore_g06584 ATCPSF160, CPSF160 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34270 ATCPSF160, CPSF160 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005610 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Sam_g14606 No alias component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Smo82277 ATCPSF160, CPSF160 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
Tin_g41718 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Zm00001e008515_P003 ATCPSF160,... component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 1059 1390
No external refs found!