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  5. Solyc03g045030.2.1

Solyc03g045030.2.1 (TCP12, BRC2, Solyc03g045030)


Aliases : TCP12, BRC2, Solyc03g045030

Description : transcription factor (TCP)


Gene families : OG0000529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000529_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g045030.2.1
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00158020 TCP4, MEE35,... RNA biosynthesis.transcriptional activation.TCP... 0.02 OrthoFinder output from all 47 species
AMTR_s00154p00072430 TCP13, TFPD,... RNA biosynthesis.transcriptional activation.TCP... 0.02 OrthoFinder output from all 47 species
AT1G68800 TCP12, BRC2 TCP domain protein 12 0.03 OrthoFinder output from all 47 species
AT3G18550 BRC1, ATTCP18, TCP18 TCP family transcription factor 0.01 OrthoFinder output from all 47 species
AT5G08070 TCP17 TCP domain protein 17 0.02 OrthoFinder output from all 47 species
AT5G60970 TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 0.06 OrthoFinder output from all 47 species
Aev_g30836 TCP10 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23927 TCP13, TFPD, PTF1 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30415 TCP2 TCP-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g30172 ATTCP24, TCP24 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02912.t1 ATTCP24, TCP24,... TCP-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene02925.t1 TCP3, Aspi01Gene02925 TCP-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene52180.t1 TCP3, Aspi01Gene52180 TCP-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene55158.t1 TCP5, Aspi01Gene55158 TCP-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene62817.t1 TCP2, Aspi01Gene62817 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0010.g012107 ATTCP24, TCP24 TCP-type transcription factor & original description: CDS=1-672 0.11 OrthoFinder output from all 47 species
Azfi_s0538.g076302 TCP3 TCP-type transcription factor & original description: CDS=1-1575 0.01 OrthoFinder output from all 47 species
Dde_g13231 TCP3 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g18891 TCP2 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07001 TCP3 TCP-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01008109001 TCP5 RNA biosynthesis.transcriptional activation.TCP... 0.04 OrthoFinder output from all 47 species
GSVIVT01021528001 ATTCP24, TCP24 RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
GSVIVT01032911001 TCP13, TFPD, PTF1 RNA biosynthesis.transcriptional activation.TCP... 0.06 OrthoFinder output from all 47 species
Gb_30049 TCP2 transcription factor (TCP) 0.01 OrthoFinder output from all 47 species
Gb_38379 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os03g49880.1 TCP12, BRC2,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
LOC_Os07g05720.1 TCP2, LOC_Os07g05720 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
LOC_Os08g33530.1 BRC1, ATTCP18,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
LOC_Os12g42190.1 ATTCP24, TCP24,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Len_g11401 TCP5 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_101752g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_3891g0010 TCP13, TFPD, PTF1 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
MA_49143g0010 No alias no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
MA_78665g0010 TCP2 transcription factor (TCP) 0.05 OrthoFinder output from all 47 species
Pir_g05279 TCP2 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18726 ATTCP24, TCP24 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g077250.2.1 TCP4, MEE35,... transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Solyc05g012840.1.1 TCP4, MEE35,... transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Solyc06g069240.2.1 TCP12, BRC2,... transcription factor (TCP) 0.2 OrthoFinder output from all 47 species
Solyc07g053410.4.1 TCP4, MEE35,... transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Zm00001e005909_P001 TCP2, Zm00001e005909 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Zm00001e011911_P001 ATTCP24, TCP24,... transcription factor (TCP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 81 148
No external refs found!