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  5. Solyc03g082480.4.1

Solyc03g082480.4.1 (GIF3, Solyc03g082480)


Aliases : GIF3, Solyc03g082480

Description : cofactor component GIF of GRF-GIF transcriptional complex


Gene families : OG0001681 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001681_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g082480.4.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g074441 GIF3 cofactor component *(GIF) of GRF-GIF transcriptional... 0.02 OrthoFinder output from all 47 species
Aspi01Gene07772.t1 Aspi01Gene07772 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.29G051000.1 GIF3, Ceric.29G051000 cofactor component *(GIF) of GRF-GIF transcriptional... 0.03 OrthoFinder output from all 47 species
Cre01.g055200 GIF1, GIF, ATGIF1, AN3 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.01 OrthoFinder output from all 47 species
GSVIVT01027418001 GIF3 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 OrthoFinder output from all 47 species
LOC_Os11g40100.3 GIF3, LOC_Os11g40100 cofactor component GIF of GRF-GIF transcriptional complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003713 transcription coactivator activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR007726 SS18_N 22 79
No external refs found!