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  5. Solyc03g082710.4.1

Solyc03g082710.4.1 (Solyc03g082710)


Aliases : Solyc03g082710

Description : NSR RNA splicing regulator


Gene families : OG0000722 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000722_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc03g082710.4.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00116460 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Adi_g006726 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055617 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078877 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g62857 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16459 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04411.t1 Aspi01Gene04411 RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037752 No alias RNA splicing regulator *(NSR) & original description: CDS=84-989 0.03 OrthoFinder output from all 47 species
Ceric.09G015200.1 Ceric.09G015200 RNA splicing regulator *(NSR) & original description:... 0.05 OrthoFinder output from all 47 species
Len_g14388 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g07294 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g13596 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10153 No alias RNA splicing regulator *(NSR) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g18158 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01741 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g09764 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22372 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g39064 No alias RNA splicing regulator *(NSR) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g49757 No alias RNA splicing regulator *(NSR) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g56657 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 134 204
No external refs found!